|
Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.02 | 2l7uA | 0.272 | 2.75 | 0.191 | 0.310 | 0.91 | III | complex1.pdb.gz | 58,59,60,111,113,114,124,125,126,128,130 |
| 2 | 0.02 | 1vsc0 | 0.517 | 3.20 | 0.110 | 0.628 | 0.64 | III | complex2.pdb.gz | 103,105,108,135,157,158,192 |
| 3 | 0.01 | 1epf0 | 0.453 | 4.17 | 0.136 | 0.603 | 0.41 | III | complex3.pdb.gz | 113,117,120,121,123 |
| 4 | 0.01 | 1ncg0 | 0.240 | 3.33 | 0.070 | 0.297 | 0.41 | III | complex4.pdb.gz | 34,35,36,37,38,39,110,112,125,126,128 |
| 5 | 0.01 | 2if70 | 0.415 | 4.63 | 0.088 | 0.583 | 0.49 | III | complex5.pdb.gz | 54,58,61,62,63,66,113,115,117 |
| 6 | 0.01 | 1imhC | 0.455 | 4.98 | 0.039 | 0.645 | 0.45 | QNA | complex6.pdb.gz | 32,34,131,215 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
|