Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Download alignment | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| SS Seq | CCSSSSSCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCSSSSSSSCCCCSSSCCCSSSSCCCCCHHHHHHHCCCCSSSSSSSSCCCCCCCCCSSSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCSSSSSSCCCCCCCHHHHHHHHHHHHCCCCCSSSSSSCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCSSSSCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGDTEGTVPGNALVVDPDKPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGALMWALGKVVGTPEVLRVYIGSFWSQPLLVPDNRRLFELEEQDLFRDIQGL |
1 | 5mtvA | 0.61 | 0.56 | 15.96 | 1.17 | DEthreader | | KPMILLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMYG-ETEGS-TPG--------NALVVRSGNALNRFMCSQLPNQ-VLKSISIIDSPGIL--IS-R--G-YDFCQVLQWFAERVDRIILLFDAHKLDISDEFSEAIKAFRGQDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVITPEVLRVYIGSF-WAQPLQNTDNRRLFEAEAQDLRDISL-K |
2 | 5mtvA1 | 0.79 | 0.76 | 21.57 | 1.87 | SPARKS-K | | KPMILLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMYGETEGSTPGNALVVDPKKPFRKLSRFGNAFLNRFMCSQLPNQVLKSISIIDSPGILISRG------YDFCQVLQWFAERVDRIILLFDAHKLDISDEFSEAIKAFRGQDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVINTPEVLRVYIGSFWAQPLQNTDNRRLFEAEAQDLFRDIQ-- |
3 | 5mtvA | 0.74 | 0.71 | 20.27 | 0.71 | MapAlign | | KPMILLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMYGETEGSTPGNALVVDPKKPFRKLSRFGNAFLNRFMCSQLPNQVLKSISIIDSPGIL------ISRGYDFCQVLQWFAERVDRIILLFDAHKLDISDEFSEAIKAFRGQDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVINTEVLRVYIGSFWAQPLQ-NTDNRRLFEAEAQDLFRDIQSL |
4 | 5mtvA | 0.80 | 0.78 | 22.05 | 0.52 | CEthreader | | KPMILLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMYGETEGSTPGNALVVDPKKPFRKLSRFGNAFLNRFMCSQLPNQVLKSISIIDSPGILI------SRGYDFCQVLQWFAERVDRIILLFDAHKLDISDEFSEAIKAFRGQDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVINTPEVLRVYIGSFWAQPLQNTDNRRLFEAEAQDLFRDIQSL |
5 | 5mtvA1 | 0.80 | 0.77 | 21.81 | 1.69 | MUSTER | | KPMILLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMYGETEGSTPGNALVVDPKKPFRKLSRFGNAFLNRFMCSQLPNQVLKSISIIDSPGILIS------RGYDFCQVLQWFAERVDRIILLFDAHKLDISDEFSEAIKAFRGQDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVINTPEVLRVYIGSFWAQPLQNTDNRRLFEAEAQDLFRDIQ-- |
6 | 5mtvA | 0.79 | 0.77 | 21.82 | 1.19 | HHsearch | | KPMILLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMYGETEGSTPGNALVVDPKKPFRKLSRFGNAFLNRFMCSQLPNQVLKSISIIDSPGILISR------GYDFCQVLQWFAERVDRIILLFDAHKLDISDEFSEAIKAFRGQDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVINTPEVLRVYIGSFWAQPLQNTDNRRLFEAEAQDLFRDIQSL |
7 | 5mtvA1 | 0.80 | 0.77 | 21.81 | 2.35 | FFAS-3D | | KPMILLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMYGETEGSTPGNALVVDPKKPFRKLSRFGNAFLNRFMCSQLPNQVLKSISIIDSPGILIS------RGYDFCQVLQWFAERVDRIILLFDAHKLDISDEFSEAIKAFRGQDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVINTPEVLRVYIGSFWAQPLQNTDNRRLFEAEAQDLFRDIQ-- |
8 | 5mtvA1 | 0.80 | 0.77 | 21.81 | 0.78 | EigenThreader | | KPMILLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMYGETEGSTPGNALVVDPKKPFRKLSRFGNAFLNRFMCSQLPNQVLKSISIIDSPGILIS------RGYDFCQVLQWFAERVDRIILLFDAHKLDISDEFSEAIKAFRGQDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVINTPEVLRVYIGSFWAQPLQNTDNRRLFEAEAQDLFRDIQ-- |
9 | 5mtvA | 0.80 | 0.78 | 22.05 | 1.88 | CNFpred | | KPMILLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMYGETEGSTPGNALVVDPKKPFRKLSRFGNAFLNRFMCSQLPNQVLKSISIIDSPGIL------ISRGYDFCQVLQWFAERVDRIILLFDAHKLDISDEFSEAIKAFRGQDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVINTPEVLRVYIGSFWAQPLQNTDNRRLFEAEAQDLFRDIQSL |
10 | 5mtvA1 | 0.63 | 0.58 | 16.54 | 1.17 | DEthreader | | KPMILLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMYG-ETEGS-TPG--------NALVVRSGNALNRFMCSQLPNQ-VLKSISIIDSPGIL--IS-R--G-YDFCQVLQWFAERVDRIILLFDAHKLDISDEFSEAIKAFRGQDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVITPEVLRVYIGSF-WAQPLQNTDNRRLFEAEAQDLFRDIQ-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|