D-I-TASSER Q9NV58-D2

D-I-TASSER results for Q9NV58-D2

[Click result.zip to download all results on this page]

Input Sequence in FASTA format

>Q9NV58 (386 residues)
SLCRSGGCGVSAGNGKGVRIEFDDENDINVGGTNTAVDTTSVAEARHNPSIGEGSVGGLT
GSLSASGSHMDRIGAIRDNLSETASTMALAGASITGSLSGSAMVNCFNRLEVQADVQKER
YSLSGESGTVSLGTVSDNASTKAMAGSILNSYIPLDKEGNSMEVQVDIESKPSKFRHNSG
SSSVDDGSATRSHAGGSSSGLPEGKSSATKWSKEATAGKKSKSGKLRKKGNMKINETRED
MDAQLLEQQSTNSSEFEAPSLSDSMPSVADSHSSHFSEFSCSDLESMKTSCSHGSSDYHT
RFATVNILPEVENDRLENSPHQCSISVVTQTASCSEVSQLNHIAEEHGNNGIKPNVDLYF
GDALKETNNNHSHQTMELKVAIQTEI

Predicted Secondary Structure

Sequence	20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| SLCRSGGCGVSAGNGKGVRIEFDDENDINVGGTNTAVDTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSETASTMALAGASITGSLSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTKAMAGSILNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGSSSGLPEGKSSATKWSKEATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAPSLSDSMPSVADSHSSHFSEFSCSDLESMKTSCSHGSSDYHTRFATVNILPEVENDRLENSPHQCSISVVTQTASCSEVSQLNHIAEEHGNNGIKPNVDLYFGDALKETNNNHSHQTMELKVAIQTEI
Prediction	CCCCCCCCCCCCCCCCCSSSSCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSCCCCCCCCCCCCCCCCCCCSSSSSSCCCCSSSSSCCCCCCCSSCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCSSSSCCCCCCCCSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSCCC
Confidence	97668887766788984235327533467777776432101232047887664333465555556778865566545777777642011145334654566666643215676312430343125776411014577621122133311247764456776313313567764202047876445777766666776667778888777655556666656665545466788665667766333577777643346876678888766687787323567887889988889998767666656778767777544698767644568899877788888440003667767776655555666445787665432111001369
	H:Helix; S:Strand; C:Coil

Predicted Solvent Accessibility

Sequence	20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| SLCRSGGCGVSAGNGKGVRIEFDDENDINVGGTNTAVDTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSETASTMALAGASITGSLSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTKAMAGSILNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGSSSGLPEGKSSATKWSKEATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAPSLSDSMPSVADSHSSHFSEFSCSDLESMKTSCSHGSSDYHTRFATVNILPEVENDRLENSPHQCSISVVTQTASCSEVSQLNHIAEEHGNNGIKPNVDLYFGDALKETNNNHSHQTMELKVAIQTEI
Prediction	73033211113345352031303464335243432313233224334323123420343333232323435423334442554322100112203232344634433341414242445424334643322113345423331212112334334444344241313274444414234443444445244543444443355454444534653446544654542545735355444424341354552545415354244534533544354235232541743536434344533331321332453564425523452435413444536624411302443254314342533446334544553544345233204467
	Values range from 0 (buried residue) to 8 (highly exposed residue)

Predicted Contact, Hydrogen and Distance Map Used in D-I-TASSER simulation

Contact Map

Distance Map

Hydrogen bond networks

D-I-TASSER simulation is guided by the consensus contact map (left figure), distance map (middle figure) and Hydrogen bond network (right figure) derived based on confidence scores of AttentionPotential. In the contact, distance map and hydrogen bond networks, the axes mark the residue index along the sequence. For the contact map, each dot represents a residue pair with predicted contact, while for the distance map and hydrogen bond network, a color scale represents a distance of 1-20+ angstroms or a angle of 0-180 degree.

Top 10 threading templates used by D-I-TASSER

Rank

PDB
hit

ID1

ID2

Cov

Norm.
Zscore

Download
alignment

                  20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280                 300                 320                 340                 360                 380

                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |

SS
Seq

CCCCCCCCCCCCCCCCCSSSSCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSCCCCCCCCCCCCCCCCCCCSSSSSSCCCCSSSSSCCCCCCCSSCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCSSSSCCCCCCCCSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSCCC
SLCRSGGCGVSAGNGKGVRIEFDDENDINVGGTNTAVDTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSETASTMALAGASITGSLSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTKAMAGSILNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGSSSGLPEGKSSATKWSKEATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAPSLSDSMPSVADSHSSHFSEFSCSDLESMKTSCSHGSSDYHTRFATVNILPEVENDRLENSPHQCSISVVTQTASCSEVSQLNHIAEEHGNNGIKPNVDLYFGDALKETNNNHSHQTMELKVAIQTEI

6zu9p

0.07

0.06

2.61

1.03

SPARKS-K

SWLMDVRDQFVLQDDVKTSVFWNSMFNEEDSLVESRENW-STNYVRFSPK-GTYLFSYHQQGVTANFDRLRRFYVRNSSVSPNEKYLVTFSTEPIIVEEDNEFSPFTKKNEHQLCIGLLMATFPVIKSYLKWPLVRWSYN---------DKYCARMVGD---SLIVHDATKN-FMPLEAKALKPSGIRDFSFAPEGVKLQPFRNGDEPSVLLATPETNNSACTATIAEV-PRGRVLKTVNLVQ--VSNVTLHWQN-QAEFLCFNVERHTKSGKTQFSNLQICRLTERDIPVEKVELKDSVFEFGWEP----HGNRF-----VTISVHEVADMNYAIPANTIRFYAPETKEKTDVIKRWSLVKEIPKTFANTVSWSPAGRFVVVGAL

1vt4I3

0.10

0.09

3.47

1.24

MapAlign

GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG------------------

2pffB

0.19

0.18

5.75

1.13

HHsearch

SLVLLVPTASFF-----IASQLQEQFNKILTEGFAADDPTTPAELKYVSSLVEPSVGQFDQVLNLCLTEFENCYLIHAVGEGNAQLVAIFGELIRTTLDAEQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIVVTAKLLGFTPGELRSYLKGATGHSQLVTADSWESFFVSVRKAIT---VLFFIGVRCYEAYPNTSL-----PPSILE-DSLENNEGVPSPMLSI--SNLTEQVQDVNSHLPAGKQVEISLVNGTLRKAKAPSGLDQSRIPFSEFSNRFLPVASPFHSHLLSDLINKD------L-VKNNVSFNAKDI-QIPVYD-TFDGSDLRVLSSISERIVDCPVKWET----TTQFKATHILDFGPGTGVRVAGTLDI

1vt4I3

0.10

0.09

3.28

0.75

CEthreader

GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-------------------------------------

3oc3A

0.06

2.51

0.62

EigenThreader

FFEQISDNLLSYEWYKRHGAFLAFAADIQIRVDSKLFSKIYEILVTDKFNTVAPVRDAAAYLLSRIYVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHMVKNLSEESIDFLVAEVVLIEEKDEIREMAIKLLKKRFVSYEDLYFTM------KSGLPDLQSTIETTTSRTFISLYRSVQALVKDTPKDLKMADYTRMVASIEFPGLERATALFEVETCKQFLHLFSKMITEYYDAEKISIHSFFHKIGSLENRLDFFSKTIHIYTKTSGFVFDDALREKNITVINGFMRSLEFNEKFVRKALEDLDVELLDAVLMSGDHSFNPLFVKPLLRNISGNIDREASSKVLSKVIPTLGFSTNTKI-------SK

3cnfB

0.10

0.09

3.14

0.37

FFAS-3D

----------VINGPASTYLRENEVLVVMPDYYDVVSRFANANLQMNNNRFDQADFIQTSDAVRQLRALMPTLERIAQITDVDSTDYGKLTLRFLGTLTRSLKMQQIRRIRLRYDDQIDIEAFRWRRLSVGLRLITNPRIARRFNGVRIM------YLTDDDPDPDFVPDVPEGYVAVQYAHRLFSSSLANKRNRVTYTHPPTGMAYPSPTGNERAGMSKLVADNIIIKSNWVVD----ILDIEYTAEVMTPSEGYTQ---HVDAESIMTAPKGKLFHLQFMD-----GLLRPEASGEDMRL--IYPLQPISVARMRAIVNHNEVDRPREMDTGT----------------LSRNGDLLYSP---VANGQ----------------

6f1tg

0.09

0.08

2.96

1.01

SPARKS-K

---------------------LTEEEKQQILHSEEFLSFFDHSTRIVERQFFDERWSKHRVVSCLDWSSQYPEYNNNEDAPHEPD-----GVALVWNMKYKPEYVFHCQSAVMSATHPNLVVGGTYSGQIVLWDNRSNKRT--------PVQRTPLSAATHPVYCVNVVGTQNAHNLISISTDGSLDMLSHPQDSMELVHKQSKAVAVTSMSFPVGDVNNSEEGSVYHGSKAGISEM-------FEGHQGPITGHAAVGAVDFSHLFVSFDWTVKLWSTKNNKPLYSFEDNAGYVYDVMWSPTHPALFACVDGMGRLDLWNLNNDEVPTASISVEGNPALNRVRWTHSGGEQIAVPRNDEWARFGRTLAEINAN------------

3gc2A

0.14

0.03

0.97

0.35

CNFpred

-----------------------------------------------------------------------------------AFGASCALAELTGVLPEAADYRAAPLCTGDPDDLVLRLADMPGEKIAKVKVGLEAVRDGMVVNLLLEAI-------PDLHLRLDAN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

7dxjA

0.08

0.05

2.13

0.67

DEthreader

LLLRVYTHTHQDH--NVVTGALLLLLGIGSTDDDSAPLVHALHPESFF-L----------GTLICSILSRS------R-F-------------HVGDWMG--------SLSSYSELQII--------SFLEAKAENLHRGAHHYLLKLQERVLNNV------LFYKPAVRDSSVYLK--------L-A-M-IDSHEALGVNTLFEARVLISQSTEDIVLS------RIQE-LSFSPYNLPEESIAAATRLLVNHDYVCQNLHDSEHL---L---H--DL-SLSHE-------------------------------SRCENLSTPEQIPLSLQFLTPLRNIIISLARLPLVNSYTRVPPLVWKLGWEF------------------

2pffB

0.10

0.09

3.47

1.08

MapAlign

GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGYSAMIFETIVDGKLKTEKIFKEILTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMEALQYVVERVGKRTGWLVEIVNYNVEGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--------------------

(a)	ID1 is the number of template residues identical to query divided by number of aligned residues.
(b)	ID2 is the number of template residues identical to query divided by query sequence length.
(c)	Cov is equal the number of aligned template residues divided by query sequence length.
(d)	Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold.
(e)	Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz).
(f)	Template residues identical to query sequence are highlighted in color.

Top 1 final models from D-I-TASSER

Click to view	Rank^a	Download	Estimated TM-score^b
	1	model1.pdb.gz	0.401

(a)

D-I-TASSER simulations generate a large ensemble of structural conformations, i.e. decoys. These decoys are clustered by SPICKER based on pairwise structure similarity to report up to five final models from the five largest clusters. Models are ranked in descending order of cluster size. If the simulations converge well, it is possible to have less than 5 models generated, which is usually an indication of good model quality.

(b)

The model confidence is quantitatified by estimated TM-score (eTM-score), calculated based on significance of threading template alignments, contact map satisfaction rate, mean absolute error between distance of model and distance of AttentionPotential, and convergence of D-I-TASSER simulations. eTM-score is typically in the range of [0, 1], with higher eTM-score signifies higher model confidence.

Proteins with similar structure

Top 10 structural analogs in PDB (as identified by TM-align)

Rank	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov.	Download Alignment
1	5l4kZ	0.44	6.34	0.046	0.700	model1_5l4kZ.pdb.gz
2	6nobA	0.44	6.92	0.060	0.744	model1_6nobA.pdb.gz
3	5zcsE	0.42	6.90	0.048	0.705	model1_5zcsE.pdb.gz
4	5d06A	0.42	6.81	0.042	0.686	model1_5d06A.pdb.gz
5	5l4kN	0.42	6.41	0.061	0.655	model1_5l4kN.pdb.gz
6	4cvbA	0.41	6.48	0.040	0.658	model1_4cvbA.pdb.gz
7	3fgwA	0.41	6.85	0.057	0.689	model1_3fgwA.pdb.gz
8	5oqlO	0.41	6.46	0.047	0.645	model1_5oqlO.pdb.gz
9	1kv9A	0.40	6.60	0.034	0.653	model1_1kv9A.pdb.gz
10	4adyA	0.40	6.49	0.048	0.645	model1_4adyA.pdb.gz

(a)	Query structure is shown in cartoon, while the structural analog is displayed using backbone trace.
(b)	Ranking of proteins is based on TM-score of the structural alignment between the query structure and known structures in the PDB library.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov. represents the coverage of the alignment by TM-align and is equal to the number of structurally aligned residues divided by length of the query protein.

Predicted Gene Ontology (GO) Terms

Molecular Function (MF)

GO term	Cscore^GO	Name
GO:0061630	1.00	ubiquitin protein ligase activity
GO:0031624	1.00	ubiquitin conjugating enzyme binding

Download full result of the above consensus prediction.

Click the graph to show a high resolution version.

(a)

Cscore^GO is the confidence score of predicted GO terms. Cscore^GO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.

(b)

The graph shows the predicted terms within the Gene Ontology hierachy for Molecular Function. Confidently predicted terms are color coded by Cscore^GO:

[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Biological Process (BP)

GO term	Cscore^GO	Name
GO:0042787	1.00	protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0032436	1.00	positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0000209	1.00	protein polyubiquitination

Download full result of the above consensus prediction.

Click the graph to show a high resolution version.

(a)

Cscore^GO is the confidence score of predicted GO terms. Cscore^GO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.

(b)

The graph shows the predicted terms within the Gene Ontology hierachy for Biological Process. Confidently predicted terms are color coded by Cscore^GO:

[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Cellular Component (CC)

GO term	Cscore^GO	Name
GO:0000151	1.00	ubiquitin ligase complex
GO:0043229	0.98	intracellular organelle
GO:0044422	0.78	organelle part
GO:0044446	0.77	intracellular organelle part
GO:0005737	0.77	cytoplasm
GO:0043232	0.73	intracellular non-membrane-bounded organelle
GO:0044430	0.72	cytoskeletal part
GO:0005813	0.71	centrosome
GO:0044444	0.52	cytoplasmic part

Download full result of the above consensus prediction.

Click the graph to show a high resolution version.

(a)

Cscore^GO is the confidence score of predicted GO terms. Cscore^GO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.

(b)

The graph shows the predicted terms within the Gene Ontology hierachy for Cellular Component. Confidently predicted terms are color coded by Cscore^GO:

[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Predicted Enzyme Commission (EC) Numbers

Top 5 enzyme homologs in PDB

Rank	Cscore^EC	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov.	EC Number	Predicted Active Site Residues
1	0.060	2b3xA	0.400	7.27	0.047	0.707	4.2.1.3	NA
2	0.060	1kv9A	0.404	6.60	0.034	0.653	1.1.99.-	NA
3	0.060	1rw9A	0.386	6.85	0.038	0.640	4.2.2.5	NA
4	0.060	1bxrA	0.377	6.95	0.050	0.640	6.3.5.5	NA
5	0.060	2bhzA	0.391	6.79	0.033	0.640	3.2.1.141	NA

	Click on the radio buttons to visualize predicted active site residues.
(a)	Cscore^EC is the confidence score for the Enzyme Commission (EC) number prediction. Cscore^EC values range in between [0-1]; where a higher score indicates a more reliable EC number prediction.
(b)	TM-score is a measure of global structural similarity between query and template protein.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein.

Predicted Ligand Binding Sites

Template proteins with similar binding site:

Rank	Cscore^LB	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov.	BS-score	Lig. Name	Download Complex	Predicted binding site residues
1	0.01	2wxiA	0.377	7.02	0.038	0.637	0.22	S30	complex1.pdb.gz	9,51,52,59
2	0.01	2wxmA	0.399	6.44	0.037	0.624	0.26	ZZM	complex2.pdb.gz	2,9,50,52
3	0.01	2wxqA	0.399	6.43	0.027	0.624	0.15	ZZQ	complex3.pdb.gz	50,110,111,112
4	0.01	2f7rA	0.343	7.15	0.039	0.601	0.14	SK3	complex4.pdb.gz	7,38,49,50,51
5	0.01	1flgB	0.393	6.64	0.037	0.640	0.14	PQQ	complex5.pdb.gz	53,54,55,56
6	0.01	2j5wA	0.396	6.88	0.054	0.666	0.26	NA	complex6.pdb.gz	9,52,55
7	0.01	2wxpA	0.399	6.48	0.037	0.624	0.11	GD9	complex7.pdb.gz	49,108,109,111,114
8	0.01	2wxjA	0.399	6.41	0.027	0.622	0.19	RW3	complex8.pdb.gz	49,63,92,93,94,95,99,100
9	0.01	1kv9A	0.404	6.60	0.034	0.653	0.13	PQQ	complex9.pdb.gz	50,52,66
10	0.01	2wxgA	0.400	6.41	0.041	0.622	0.17	ZZN	complex10.pdb.gz	11,50,51,52,53,82

	Click on the radio buttons to visualize predicted binding site and residues.
(a)	Cscore^LB is the confidence score of predicted binding site. Cscore^LB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction.
(b)	BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
(c)	TM-score is a measure of global structural similarity between query and template protein.
(d)	RMSD^a the RMSD between residues that are structurally aligned by TM-align.
(e)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(f)	Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein.

[Click result.zip to download all results on this page]

References:
1.	Wei Zheng, Chengxin Zhang, Yang Li, Robin Pearce, Eric W. Bell, Yang Zhang. Folding non-homology proteins by coupling deep-learning contact maps with I-TASSER assembly simulations. In preparation, 2020.