Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360
| | | | | | | | | | | | | | | | | | |
| SS Seq | CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSSSSCCCCCCCCSSSSSCCCCHHHHHHHHHHHHHCCCCCCSSSSSHHHHHHCCHHHHHHHHHCCSSSSCCCHHHHHHHHHHHHHHHHCCCCCSSSSSCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCSSSCCCCCHHHHHHHHHCCCCCCSSSSSSSSCCCCCCCCCCCCCCHHHHHCCCCCSSSSSSSSSSHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC MLLSLVLHTYSMRYLLPSVVLLGTAPTYVLAWGVWRLLSAFLPARFYQALDDRLYCVYQSMVLFFFENYTGVQILLYGDLPKNKENIIYLANHQSTVDWIVADILAIRQNALGHVRYVLKEGLKWLPLYGCYFAQHGGIYVKRSAKFNEKEMRNKLQSYVDAGTPMYLVIFPEGTRYNPEQTKVLSASQAFAAQRGLAVLKHVLTPRIKATHVAFDCMKNYLDAIYDVTVVYEGKDDGGQRRESPTMTEFLCKECPKIHIHIDRIDKKDVPEEQEHMRRWLHERFEIKDKMLIEFYESPDPERRKRFPGKSVNSKLSIKKTLPSMLILSGLTAGMLMTDAGRKLYVNTWIYGTLLGCLWVTIKA |
1 | 1k30A | 0.08 | 0.06 | 2.38 | 1.00 | DEthreader | | -------RNAVIESADIVLSNMTVALDRILLDVEDPF-F-----H-HKAIREFDYYIFGQNYIRPLI--DFGNSFVGNLFDIEELNVVLISNHQTEADPAIISLLLETNYIAENTIFVAGDRVLADPLCKPFSIGNLICVYSKKHMKRNTRSLKEMALLLR-GGSQLIWIAPSGGRDRP-DPS-T--------------EWYPAPFDASSVDNMRRLIQDVPGHLFPLALLCHDI------VEIIRVI-AF---N-GAGLSVAPEISFEEIAPEEVREAYSKALFDSVAMQYNVLKTGKQGLGASTADVSLSQPW------------------------------------------------- |
2 | 5kymA | 0.17 | 0.11 | 3.54 | 0.96 | SPARKS-K | | MRKIRNLLLTLYFYFIATVYIVFYGGFVLFRSFLM------RDREKARKYVLKEIEKFGKRAFTWL----FSDVVVEGSNIPKDRNFIVVANHQSLMDIPLILGFV------ATGAFIAKEELRKIPGVNWYIRYLNGVFL-----RAVRALREAIEKLKNGVT---FIVFPEGTR-SPDGK--------------VLSFK------KDSLMIAVKTG------VPVLPVSIWG------------TYHLIPKTPGKVFLKIHPVDPKGFSS----EEELRKYVEEVVKRGVEELKARWSK--------------------------------------------------------------- |
3 | 1k30A | 0.09 | 0.07 | 2.66 | 1.32 | MapAlign | | --VRSEEELLSCIKKETEKLPPNVAAGMEELYQNYRNAVIESADEIVLSNMTVALDRILLDVGQNYIRPLIDFSFVGNLFIEQGHNVVLISNHQTEADPAIISLLLETNYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKRKANTRSLKEMALLLR-GGSQLIWIAPSGGR-----------DR--PDPSTGEW--YPAPFDASSVDNMRRLISDVPGHLFPLALLCHDIM----PPPSQVEIEIRVIAFNGAGLSVAEISFEEIANPEEVREAYSKALFDSVAMQYNVLKTAKQGLGASTADVSLSQPW------------------------------------------------- |
4 | 5kymA | 0.15 | 0.10 | 3.33 | 1.28 | CEthreader | | ----MRKIRNLLLTLYFYFIATVYIVFYGGFVLFRSFLMRD------REKARKYVLKEIEKFGKRAFTWLFSDVVVEGSENIPDRNFIVVANHQSLMDIPLILGFV------ATGAFIAKEELRKIPGVNWYIRYLNGVFLRAV------RALREAIEKLKNGV--TFIVFPEGTRSPDG---------------------KVLSFKKDSLMIAVKTG----VPVLPVSIWGTYHLIPKGRWTF---------TPGKVFLKIHEPVDPKGFSSEEELRKYVEEVVKRGVEELKARWSK------------------------------------------------------------------ |
5 | 5kymA | 0.16 | 0.10 | 3.47 | 0.89 | MUSTER | | ----MRKIRNLLLTLYFYFIATVYIVFYGGFVLFRSFLMR--DREKARKYVLKEIEKFGKRAFTWL-----SDVVVEGSENPKDRNFIVVANHQSLMDIPLILGFVA------TGAFIAKEELRKIPGVNWYIRYLNGVFLRAV-----RALREAIEKLKN---GVTFIVFPEGTRSPD---------------------GKVLSFKKDSLMIAVKT---GVP-VLPVSIWGTYHLIPKGRWTF---------TPGKVFLKIEPVDPKGF-SSEEELRKYVEEVVKRGVEELKARWSK------------------------------------------------------------------ |
6 | 5kymA | 0.17 | 0.11 | 3.62 | 4.22 | HHsearch | | MR----KIRNLLLTLYFYFIATVYIVFYGGF---VLFRSFLMRREKARKYVLKEIEKFGKRAF----TWLFSDVVVEGSENPKDRNFIVVANHQSLMDIPLILGFV-----AT-GAFIAKEELRKIPGVNWYIRYLNGVFL-----RAVRALREAIEKLKNGVT---FIVFPEGTRSPDGK---------------VLSFKK------DSLMIAVKTG------VPVLPVSIWGTYHL-----IPK--GRWTFTPGKVFLKIEPVDPKGFSSE-E---ELRKYVEEVVKRGVEELKARWSK--------------------------------------------------------------- |
7 | 5kymA | 0.19 | 0.12 | 3.90 | 1.28 | FFAS-3D | | ----------KIRNLLLTLYFYFIATVYIVFYGGFVLFRSFLMREKARKYVLKEIEKFGKRAFTWL----FSDVVVEGSEIPKDRNFIVVANHQSLMDIPLILGF------VATGAFIAKEELRKIPGVNWYIRYLNGVFLRAV--RALREAIEKLKN------GVTFIVFPEGTRSPDGKVLSFKKDSLMIAVKTGVP-------------------------VLPVSIW--------------GTYHLIPKTPGKVFLKIHEVDPKGF-SSEEELRKYVEEVVKRGVEELKARWSK------------------------------------------------------------------ |
8 | 1k30A | 0.10 | 0.07 | 2.78 | 1.22 | EigenThreader | | LPPNVAAGMEELYQNYRNAVIESGVLSNMTVALDRILLDVEDFD---------YYIFGQNYIRPLIDF---GNSFVGNLSLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVRVLADPL--CKPFSIGRNLIYSKKHKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRP---------------DPSTGEWYPAPFDASSVDNMRRLIQHSDVPLFPLALLCHDIMPPPSQVEIEIR----VIAFNGAGLSVAPISFEEIAATHEVREAYSKALFDSVAMQYNVLKTAISGKQGLGASTADVSLPW------------------------------------------------ |
9 | 5kymA | 0.14 | 0.09 | 3.18 | 1.12 | CNFpred | | ------MRKIRNLLLTLYFYFIATVYIVFYGGFVLFRSFLMRDREKARKYVLKEIEKFGKRAFTWL----FSDVVVEGSENIKDRNFIVVANHQSLMDIPLILGFVA------TGAFIAKEELRKIPGVNWYIRYLNGVFL-----RAVRALREAIEKLKN---GVTFIVFPEGTRSPDG---------------KVLSFKK------DSLMIAVKT---GVPVLPVSIWGTYHL--------IPKGRWTFT--PGKVFLKIHPVDPKGF----SSEEELRKYVEEVVKRGVEELKARWSK--------------------------------------------------------------- |
10 | 5kymA | 0.13 | 0.09 | 3.03 | 0.83 | DEthreader | | ---M-RKIRNLLLTLYFYFIATVYIVFYGGFVLFRS-FL--MR-DR-EKARKYVLKEIEKFGKRAFT-WLFSDVVVEGSENPKDRNFIVVANHQSLMDIPLILGFVA-------TGAFIAKEELRKIPVNWYIR-YLNGVFLRAV-RALREAIEKLKNG------VTFIVFPEGTRSP--D-------------------GKVLSFKKDSLMIAVKT-G--V-PVLPVSIWGTYH-----LIPKGRWTF---T-PGKVFLKIHEPVDPKGF-S--SEEELRKYVEEVVKRGVEELK-ARWSK-------------------------------------------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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