Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320
| | | | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCSSSSSSSCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCSSSSSCCCCCCCCCSSSSCCCCCCCCCCCCCCCCCCCCCCC MATPLPPPSPRHLRLLRLLLSGLVLGAALRGAAAGHPDVAACPGSLDCALKRRARCPPGAHACGPCLQPFQEDQQGLCVPRMRRPPGGGRPQPRLEDEIDFLAQELARKESGHSTPPLPKDRQRLPEPATLGFSARGQGLELGLPSTPGTPTPTPHTSLGSPVSSDPVHMSPLEPRGGQGDGLALVLILAFCVAGAAALSVASLCWCRLQREIRLTQKADYATAKAPGSPAAPRISPGDQRLAQSAEMYHYQHQRQQMLCLERHKEPPKELDTASSDEENEDGDFTVYECPGLAPTGEMEVRNPLFDHAALSAPLPAPSSPPALP |
1 | 1gxdA | 0.09 | 0.09 | 3.32 | 0.62 | CEthreader | | LAHAFAPGTGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTGFLWCSTTYNFEKDGKYGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFCPDQGYSLFLVAAHAFGHAMGLEHSQDPGALMAPIYTYTKNF---RLSQDDIKGIQELYGASPDTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEE |
2 | 6yvuB | 0.07 | 0.07 | 2.79 | 0.67 | EigenThreader | | LTLLRSKLFQFKLLQSNSKLASTLEKISSSNKDLEDEKMKFQESLKKVDEIKAQRKEIKDRISSCSSKEKT-----LVLERRELEGTRVSLEERTKNLVSKMEKAEKTLKSTKHSISEAENMLEELRGQQTEHETEIKDLTQLLEKERSILDDIKLSLKDKTKNISAEI---IRHEKELEPWD---LKEMQKVLNAHRQRAMEARSSLSKAQNKSKVLTALSRLQKSGRINGGDLGVIDDSFDVAISTACECAQHCIDYLRKNKDRLRQFNLQPISTPENVPRRDTLVAQNLKQRFRVVTVDGKLIDISGTMSGGGNHVAKGLMK |
3 | 1o9iA | 0.14 | 0.10 | 3.46 | 0.49 | FFAS-3D | | YNAKPDRSDPIMARRLQESLGGTTGMMSFLSQGWASTGAEKYKDLLLDTGTEE------------------------------------------MAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPE-HSLVHGLNASLNNPNGAAWNAGYVTSSGN---------------------LVADMRFNVVRESEARLQVSRLYSMTE---------------------DEGVRDMLKFLETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSESDGD-GSKAFEGQVAKDGEKFT-------YQENPEAMGGIPHIKP |
4 | 4btgA | 0.14 | 0.14 | 4.72 | 0.91 | SPARKS-K | | KADAVVPPTAILEQLRHELFHHITTDFVCHVLSFILPDAAYVYRLVDCVRASRMLTALSSVDSK--MLQATFKAKGAATTAFERSRGNF----DANAVVSSVLTILGRLWSPSTPKELDPSARLRNTNGIDQLRKQRGRAEVIFSDEELSSTIIPWFKLRPINETTSYIGQTSAIDHMGQPSHVVVYETAFTEPGISDRMSATLAPIGNTFAVSAFVKNRTAVYEAVSQRGTVNSNGAEMTLGPSVVERDYALDRDAIAALRTGIVDHNPEVVVSEHQGVAAEQGSLYLVP-VGYNGSIRTPEPLEAIAYNKPIQPSVLQAKVLD |
5 | 6zjkC | 0.11 | 0.05 | 1.91 | 0.78 | CNFpred | | ----------GERNAFDKIISFLNFLDSVQSENLPNISRYITAAEVSSLLNIQ---------------TFQEE--------------------IHAQSYSYILDTVTNPITRDKIYDQWREDEHLLERNKFIAGIYEKFNKE-------------------------------------EIHNFLRAIMANYILEGIYFYSGFSFFYTLARQGKMTATST------------------IFKYINRDEVTHLVLFQNIIKEL---------------------------------------------------------------- |
6 | 4ui9A | 0.05 | 0.03 | 1.59 | 0.67 | DEthreader | | ---------------------------------IFFVLHLVEELKLSIYQWVSCPYPYLPERLVLIALYILMFDLTLIAPIRAIYHCREPCLLIG-RQD--K------NHEVMSVVRGMFTLFHVGMMSILLLLSIHIPALPPT----RHLIGMDLVQLALIYNNRSIAL-D------------T-WYE-QTK-EELMAIKVKGPRYWLRAGLFTSDALLSFAEYFCKP---SSVLYECVTTPEMLPAYIAMDQ------------MSETSELWQIKLVLEFFS----------------------EFLPVVKCDFKFK------ |
7 | 1ti4K1 | 0.05 | 0.05 | 2.40 | 0.92 | MapAlign | | ----ISWDEATDIVVAEINRIKHATYFRFMNMMGFTYADHNPDSWEGWHWGGMHMWGFSWRLGNPESDPETFIDPHMNHTARLVADKWFSPKGTDHALSFAIAYTWLKEDSYDKEYVAANAHGFEEWADYVLGKTDGTPKTCEWAEEESGVPACEIRALARQWAKKNTYLAAGGLGGWGGACRASHGIEWARGMIALATMSTTQGVPLDYEFYFPGYAEGGISGDCENSAAGFKFAWRMLKIPECIMTMTATNRYAKMYTHDSLEFVVSQSIIILPACTNFERWDISEFANCSGYIPDNYQLCNHRVISLQAKCIEPVGESMSDY |
8 | 4dtdA | 0.14 | 0.13 | 4.52 | 0.55 | MUSTER | | --TKATPDFPTHFPKSSIGIENELAGLVVAPANSAQKSAQGDALFLTKDNQGSYQRPPSLQD-----GKNYQNWQTHTVELVSYPCEDDKAAVETRKQALWLATHFTTHIDQSNHQPLAPIQSEDGRFVIEITNAKGNGISAESQGQTITTPAAKGFGTSATPELRLLESAPWYQKSLKSQFASLTSAENLDDKELAANVFAYLTSIYLK-TAELAKKFGIYINEWDPSEQITPNANGDPKVKNAWEILPRTKPSKIVEILSKSDAKHIKPQLQSRYSESLSKNVFQY---GGEVAG-------GINNATVGDKHSPERTVPNLP |
9 | 6sgwA | 0.11 | 0.01 | 0.45 | 0.53 | HHsearch | | ALHDTRMLVDPLRTQSRAVLTGALI----------------------------------------------------------------------------------------------------------------------------------------------------------------------------LVTGLVGCFIFS-------------------------------------------------------------------------------------------------------------------- |
10 | 2g3fA | 0.08 | 0.07 | 2.95 | 0.59 | CEthreader | | DILAQGGGILSTVKDTRAASEEELLQKAHFHLQRMLSYGTTTAEVKSGYGLEKETELKQLRVAKKLHESQPVDLVSTFMGAHAIPPEYQNDPDDFLDQMLSLLPEIKEQELASFADIFTETGVFTVSQSRRYLQKAAEAGFGLKIHADEIDPLGGAELAGKLKAVSADHLVGTSDEG------IKKLAEAGTIAVLLPGTTFYLGKSTYARARAMIDEGVCVSLATDFNPGSSPTENIQLIMSIAALHLKMTAEEIWHAVTVNAAYAIGKGEEAGQLKAGRSADLVIWQAPNYMYIPYHYGVNHVHQVMKNGTIVVNR------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|