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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.71 | 1meyF | 0.908 | 0.94 | 0.500 | 0.955 | 1.57 | QNA | complex1.pdb.gz | 12,14,15,16,19,22,23,26,44,47,50,51,54,68,72,75,78,79,82 |
| 2 | 0.57 | 1meyF | 0.908 | 0.94 | 0.500 | 0.955 | 1.26 | UUU | complex2.pdb.gz | 18,21,33,45,46,72,74 |
| 3 | 0.46 | 2prtA | 0.866 | 1.14 | 0.398 | 0.943 | 0.90 | QNA | complex3.pdb.gz | 16,17,18,22,46,49,72,73 |
| 4 | 0.42 | 1a1kA | 0.862 | 1.12 | 0.373 | 0.943 | 0.92 | QNA | complex4.pdb.gz | 50,61,72,73,74 |
| 5 | 0.33 | 1tf3A | 0.689 | 2.84 | 0.299 | 0.966 | 1.00 | QNA | complex5.pdb.gz | 25,26,31,40,41,42,43,47,50,51,54,59,69,70,71,75,78,79,82 |
| 6 | 0.30 | 2jp9A | 0.823 | 1.65 | 0.386 | 0.932 | 1.06 | QNA | complex6.pdb.gz | 14,16,19,22,23,26,40,42,43,44,47,51,54,70,72,75,78 |
| 7 | 0.08 | 1p47B | 0.888 | 0.78 | 0.378 | 0.932 | 1.42 | QNA | complex7.pdb.gz | 3,14,16,22,23,26,40,43,44,47,51,54,68,70,72,75,78,79,82 |
| 8 | 0.06 | 1f2i0 | 0.604 | 1.80 | 0.328 | 0.693 | 1.14 | III | complex8.pdb.gz | 32,33,43,44,48,49,52,56,58 |
| 9 | 0.05 | 1f2iJ | 0.621 | 1.77 | 0.328 | 0.705 | 0.94 | QNA | complex9.pdb.gz | 59,70,72,75,78,79,82 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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