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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.64 | 1meyC | 0.884 | 0.91 | 0.574 | 1.000 | 1.10 | UUU | complex1.pdb.gz | 17,29,41,42,46 |
| 2 | 0.52 | 1meyF | 0.897 | 0.67 | 0.538 | 0.963 | 1.01 | QNA | complex2.pdb.gz | 12,15,18,19,22,36,40,43,46,47,50 |
| 3 | 0.42 | 1meyC | 0.884 | 0.91 | 0.574 | 1.000 | 0.97 | QNA | complex3.pdb.gz | 8,10,12,15,18,19,36,38,40,43,46,47,50 |
| 4 | 0.37 | 1a1fA | 0.905 | 0.85 | 0.426 | 1.000 | 0.95 | QNA | complex4.pdb.gz | 8,10,12,15,18,19,22,36,40,43,47,50 |
| 5 | 0.11 | 1p47B | 0.852 | 0.93 | 0.365 | 0.963 | 0.91 | QNA | complex5.pdb.gz | 8,11,12,15,19,22,36,38,40,43,46,47,50 |
| 6 | 0.08 | 1p47A | 0.864 | 0.99 | 0.352 | 0.982 | 0.86 | QNA | complex6.pdb.gz | 8,10,11,12,15,19,22,36,38,40,43,46,47,50 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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