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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.01 | 3gm1B | 0.585 | 3.02 | 0.058 | 0.841 | 0.21 | III | complex1.pdb.gz | 51,52,55 |
| 2 | 0.01 | 3ablC | 0.575 | 3.05 | 0.049 | 0.864 | 0.12 | CDL | complex2.pdb.gz | 51,52,55,73 |
| 3 | 0.01 | 3abmP | 0.576 | 3.04 | 0.049 | 0.864 | 0.14 | CDL | complex3.pdb.gz | 46,50,53,54,57 |
| 4 | 0.01 | 1f1m0 | 0.546 | 3.83 | 0.070 | 0.898 | 0.24 | III | complex4.pdb.gz | 5,10,11,31,32,34,35,36,37,38,40,41,42,45 |
| 5 | 0.01 | 3abkP | 0.577 | 3.04 | 0.049 | 0.864 | 0.11 | UUU | complex5.pdb.gz | 48,53,57,66,67 |
| 6 | 0.01 | 2j0n0 | 0.515 | 3.58 | 0.096 | 0.830 | 0.12 | III | complex6.pdb.gz | 38,42,66 |
| 7 | 0.01 | 3ablC | 0.575 | 3.05 | 0.049 | 0.864 | 0.17 | UUU | complex7.pdb.gz | 26,30,33 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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