Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCHHHHCCSSSSCCCCCCCCCCCCCCCSSSCCCCCCCSSCCCCCCCSSSSCCCHHHHHHHCCCCCCSSSSCCCCHHHHHHHHHHHCCSSSSSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCSSSCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC MRVESGSAQERGILLESLSTLLEKTTASHEGRAPGNRELTDLLPPEVCSLLNPAAIYANNEISLRDVEVYGFPRVLYFGDHLYSDLADLMLRHGWRTGAIIPELEREIRIINTEQYMHSLTWQQALTGLLERMQTYQDAESRQVLAAWMKERQELRCITKALFNAQFGSIFRTFHNPTYFSRRLVRFSDLYMASLSCLLNYRVDFTFYPRRTPLQHEAPLWMDQLCTGCMKTPFLGDMAHIR |
1 | 2bdeA | 0.19 | 0.14 | 4.67 | 0.83 | DEthreader | | --SEYSYSKLDHWQGFEFVITLANK----------------NLRFLSVPIVP--GVYQG--GNAKKFTELGGDEILYIGDHIYGDILRLKKDCNWRTALVVEELGEEIASQIR--ALPIEKKIGEA-AIKKELEQKVIHDLQLQISTVDLQISRLLQEQNSFYNPKWERVFRAGAEESYFAYQVDRFACIY-EKLSDLLHSPTYFRANRRLL------------------------------ |
2 | 2j2cA | 0.22 | 0.19 | 5.85 | 2.83 | SPARKS-K | | HGPKPGSSHRPWQSYFDLILVDARKPLFFGEGTVLRQVDTKTGKLTYTGPLQHGIVYSGGSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHVWTDKS------------SLFEELQSLDIFLASSIQRRIKKVTHDMDMC-----YGMMGSLFRSGSRQTLFASQVMRYADLYAASFINLLYYPFSYLFRAAHVLMPHES------------------------ |
3 | 2j2cA | 0.22 | 0.17 | 5.49 | 1.18 | MapAlign | | -------SHRPWQSYFDLILVDARKPLFFGEGTVLRQVTGKLKIGTYTGPLQHGIVYSGGSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHVWTD-----KSSLFEELQSLDIFL-------ASSIQRRIKKVTHDM----DMCYG-MMGSLFRSGSRQTLFASQVMRYADLYAASFINLLYYPFSYLFRAAHVLMPHES------------------------ |
4 | 2j2cA1 | 0.22 | 0.18 | 5.74 | 1.28 | CEthreader | | HGPKPGSSHRPWQSYFDLILVDARKPLFFGEGTVLRQVDTKTGKLKIGTYLQHGIVYSGGSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHVWTDK--SSLFEELQSLDIFLAS--------------SIQRRIKKVTHDMDMCYG-MMGSLFRSGSRQTLFASQVMRYADLYAASFINLLYYPFSYLFRAAHVLMPHES------------------------ |
5 | 2bdeA2 | 0.18 | 0.16 | 5.24 | 1.72 | MUSTER | | LDYALSPFLDKGEHLFEFVITLANKPRFFYDNLRFLSVNPENGT--NVHGPIVPGVYQGGAKKFTEDLGVGGDEILYIGDHIYGDILRLKKDCNWRTALVVEELGEEIASQIRAKKIGEAAIKKELEQKYVDLCTRSIHDLQLQISTVDLQISRLLQEQNSFYNPKWERVFRAGAEESYFAYQVDRFACIY-EKLSDLLEHSP-TYFRANRRLLAHDIDI---------------------- |
6 | 2bdeA | 0.19 | 0.17 | 5.36 | 5.47 | HHsearch | | IFILTNSKGEHWQGLFEFVITLANKPRFFYDNLRFLSVNPENGTT-NVHGPIVPGVYQGGNAKFTEDLGVGGDEILYIGDHIYGDILRLKKDCNWRTALVVEELGEEIASQIRALPIEAA-IKKELEQKYVDLCTRSIDDLQLQISTVDLQISRLLQEQNSFYNPKWERVFRAGAEESYFAYQVDRFACIY-EKLSDLLEHSP-TYFRANRRLLAHDIDI---------------------- |
7 | 2j2cA1 | 0.22 | 0.18 | 5.60 | 1.93 | FFAS-3D | | -----SSHRPWQSYFDLILV-DARKPLFFGEGTVLRQVDTKTKIGTYTGPLQHGIVYSGGSSTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHVWTDKS-----SLFEELQ------------SLDIFLASSIQRRIKKVTHDMDMCYGMMGSLFRSGSRQTLFASQVMRYADLYAASFINLLYYPFSYLFRAAHVLMPHES------------------------ |
8 | 2j2cA | 0.19 | 0.15 | 4.82 | 0.85 | EigenThreader | | KFLATNSDHRPWQSYFDLILVDARKPLFFGEGTVLRQVDKTGIGTYTGPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHVWTDK--SSLFEELQSLDIFLA--------------SSIQRRIKKVTHDMDMCYGMMGSL--------FLFASQVMRYADLYAASFINLLYYPFSYLFRAAHVLMPHES------------------------ |
9 | 2bdeA | 0.19 | 0.17 | 5.33 | 1.76 | CNFpred | | -------KGEHWQGLFEFVITLANKPRFFYDNLRFLSVNPENGTMTNVHGPIVPGVYQGGNKKFTEDLGVGGDEILYIGDHIYGDILRLKKDCNWRTALVVEELGEEIASQIR-KIGEAMAIKKELEQKYVDLCTR-IHDLQLQISTVDLQISRLLQEQNSFYNPKWERVFRAGAEESYFAYQVDRFACIYMEKLSDLLEHSPMTYFRANRRLLAHDIDI---------------------- |
10 | 2bdeA2 | 0.19 | 0.14 | 4.67 | 0.83 | DEthreader | | --SEYSYSKLDHWQGFEFVITLANK----------------NLRFLSVPIVP--GVYQG--GNAKKFTELGGDEILYIGDHIYGDILRLKKDCNWRTALVVEELGEEIASQIR--ALPIEKKIGEA-AIKKELEQKVIHDLQLQISTVDLQISRLLQEQNSFYNPKWERVFRAGAEESYFAYQVDRFACIY-EKLSDLLHSPTYFRANRRLL------------------------------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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