Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| SS Seq | CCCCSSSSSCCHHHHHHHHHHCCCCSSSSSSSCCCCSSCCCCCCCHHHHHHHHHHHHHHHHCCCSSSSSSSCCCCCSSSSSSSCCCCSSSSSSSSSSSSSCCCCCSSSSCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHSSSCCCCCCHHHCCC EPFCKVPVITSSKEEQKLIATSNKPAVKLLYNRSNNKYSYTSNSDDNMLKNIELFDKLSLRFNGRVLFIKDVIGDEICCWSFYGQGRKIAEVCCTSIVYATEKKQTKVEFPEARIYEETLNILLYEAQDGRGPDNALLEATGGAAGRSHHLDEDEERERIERVRRIHIKRPDDRAHLHQ |
1 | 1ve6A | 0.10 | 0.10 | 3.72 | 0.46 | CEthreader | | RPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFIDGERVEAPQ |
2 | 3hhmB | 0.06 | 0.04 | 1.98 | 0.62 | EigenThreader | | --------------MSLQNA---EWYWGD------------ISREEVNEKLR--------DTADGTFLVRDASTKGDYTLTLRG---NNKLIKIFHKYGFSDPLTFSSVVELINHYRNELLYPVVKEDEAVGKHEYNTQFQEKSREYDRLYEEYTRTSQEFNETIKIFEEQCQTQERYS |
3 | 1xbsA | 0.14 | 0.09 | 3.25 | 0.43 | FFAS-3D | | -----LPKLTSKKEVDQAIKSTAEKVLVL---------RFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLDVDQTAIPSTVFFFNGQHMK-----VDYGSPDHTKFVGSFKTKQDFIDLI--------------EVIYRGAMRGKLIVQSPIDPK------------------------ |
4 | 1syxA | 0.10 | 0.07 | 2.65 | 0.71 | SPARKS-K | | ---YMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWD---------PTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPCTVMFFFRNKHIMIDL-----GTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYS-------------------------------------- |
5 | 3rv4A | 0.10 | 0.07 | 2.51 | 0.91 | CNFpred | | -----------MDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKA-NDMVYMEKYLENPRHVEIQVLADGGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGER-------CAKACVDIGYRG---------------------------------- |
6 | 4zwjA | 0.06 | 0.04 | 1.93 | 0.83 | DEthreader | | -------INFLLYVTVQHKKLRTPLNINLVAFVLGGFTTQG--ATLGG-EIALWSLVVLAIERYVV-----------------FGENIMGATWALACAAPLAWSRYGIAAKSAIYN-PVYIMMN--------KQ--FRNCMLTIGKN---DKIPK--SV--RLL-IRIK-E-DTN-HPP |
7 | 4r04A | 0.09 | 0.08 | 3.20 | 0.71 | MapAlign | | ---VHYIIQISYEATCNLFSKNPKNSIIIQGKDEFNTSEFARLSFNLLENVSDELYELKKLLDEKYLISDISKNNSTYSVRFINKSGESVYVETESIITDVNGQLDHTSQVNTLNAAFFIQIVSTILDGINLGAPLLKKELEAKVGVLAINMSLSIAATVASIVGIGAEV--------- |
8 | 2l82A | 0.22 | 0.18 | 5.82 | 0.47 | MUSTER | | -MSQIFVVFSSLKEIVREIKRQGVRVVLLYS----------DQDEKRRRERLEEFEK------GV--DVRTVEDKE----DFRENIREIWELDVVVIVTTDDKEWIK-DF--EEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDGVDVRTVSDKE--ELIEQVRRFVRKVSLEHHHHHH |
9 | 2pffB | 0.19 | 0.19 | 6.11 | 1.01 | HHsearch | | LQENDTTLVKTKELIKNYITAAKRPFDKKRAVGEGNAAIFQGNTDDYFEELRDLYQDL-IKFSAETLLIRTTLDANILPDKDYLLSIP---ISCPLIVTAYLKGATGHSQGETDSWESFIGVRCYEAYPNTSLPPSILEDSLEQFKATHILDSGVLTHRGTGVRVIVAGTDINPDDDYG |
10 | 4m8rA | 0.06 | 0.06 | 2.66 | 0.41 | CEthreader | | RVEIFLNRASERSLGKVLLADGQTPKDFRLYGINETIERAYAEETVTGKKTWDSFRSVVNLQKTYGLCGLAEENGVQQPFFLDFCTGEWKALSTLALVIGSGNDIAAIQQRGKGYSLYNVSAGLEQSNYATKTRSNFPPEPQFELPEGFTPEQFGDYPGVFQGNEIILLSARKGNGKWV |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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