Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| SS Seq | CCCCCCSCCCHHHHHHHHHHHHHHHHCCCSSSSSSSCCSSSSSSHHHHHHCCHHHHHHHCCCCCCCCCCCCSSSSCCCCHHHHHHHHHHHHHCSSSSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC MAEGSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEIRKVHMKDVMSALWVSGLDSSYLREQMLNEPLVREIVKECSNIPLSQPQQGEAMLANFKPRG |
1 | 3i3nB | 0.24 | 0.21 | 6.59 | 1.17 | DEthreader | | --------E-CSS-HCSELSWRQNEQRQLFCDITLCFGREFRAHRSVLAAATEYFTPL-LSG------RSGRVERKGPEPDTVEAVIEYYTG-RIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAH-YTLSQLALKAAD-IRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEERERYFEELFKLLRLSQ-KPTYLTRHVKPERLVANCVKLVADAVERH-----ALRAE----- |
2 | 3i3nB | 0.25 | 0.24 | 7.34 | 1.64 | SPARKS-K | | -SEAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGREFRAHRSVLAAATEYFTPLLSGQFSESRS--GRVERKGPEPDTVEAVIEY-YTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAH-YTLSQLALKAAD-IRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEERERYFEELFKLLRLSQ-KPTYLTRHVKPERLVANNVCVKLVADAVERHALRAE-------- |
3 | 3i3nB | 0.24 | 0.21 | 6.69 | 1.24 | MapAlign | | -----------HCSELSWRQNEQRRQGLFCDITLCFGGREFRAHRSVLAAATEYFT-PLLSGQFSE-SRSGRVEEPGPEPDTVEAVIEY-YTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAH-YTLSQLALKAA-DIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEERERYFEELFKLLRLSQKYLTHVKPLVANNEVCVKLVADAVERHALR--------------- |
4 | 6i2mA | 0.22 | 0.16 | 5.03 | 0.97 | CEthreader | | ---------MNNSSELIAVINGFRNSGRFCDISIVINDERINAHKLILSGASEYFSILFSNNFIDSNEY--EVNLSHLDYQSVNDLIDYIYGIPLSLTNDNVKYILSTADFLQIGSAITECENYILKNLCSKNCIDFYIYADKYNNKKIESASFNTILQNILRLINDENFKYLTEESMIKILSDDMLNIKNEDFAPLILIKWLESTQ--------------------------------------------------------------- |
5 | 3i3nB | 0.24 | 0.22 | 6.93 | 1.61 | MUSTER | | -SEAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGREFRAHRSVLAAATEYFTPLLSGQFSESRSG--RVERKGPEPDTVEAVIEYYT-GRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHY-TL-SQLALKAADIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEERERYFEELFKLLRLSQ-KPTYLTRHVKPEEVCVKLVADAVERHALRAE------------- |
6 | 3i3nB | 0.25 | 0.23 | 7.24 | 3.20 | HHsearch | | -SEAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGREFRAHRSVLAAATEYFTPLLSGQFSESRS--GRVERKGPEPDTVEAVIEY-YTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAH-YTLSQLALKAAD-IRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEERERYFEELFKLLRLSQ-KPTYLTRHVKPERLVANNEVKLVA-DAVERHALRAE-------- |
7 | 6i2mA | 0.22 | 0.16 | 5.02 | 2.43 | FFAS-3D | | ----------NNSSELIAVINGFRNSGRFCDISIVINDERINAHKLILSGASEYFSILFSNNFIDSNEY--EVNLSHLDYQSVNDLIDYIYGIPLSLTNDNVKYILSTADFLQIGSAITECENYILKNLCSKNCIDFYIYADKYNNKKIESASFNTILQNILRLINDENFKYLTEESMIKILSDDMLNIKNEDFAPLILIKWLEST---------------------------------------------------------------- |
8 | 3i3nB | 0.20 | 0.19 | 6.02 | 1.60 | EigenThreader | | SEAEDFECSS-HCSELSWRQNEQRRQGLFCDITLCFGGREFRAHRSVLAAATEYFT--PLLSGQFSESRSGRVERKWPEPDTVEAVIEYYT-GRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAH-YTLSQLALKAADINFHKVIQDEEFYTL---PFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEERERYFEELFKLLRLSQKPTYLTRHLVANNEVCVKLVADAVERHALRAE------------- |
9 | 4ap2A | 0.25 | 0.23 | 7.25 | 1.69 | CNFpred | | --EAEDFECSSHCSELSWRQNEQRRQGLFCDITLCF-GREFRAHRSVLAAATEYFTPLLSGQFSESR--SGRVEMRGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEERERYFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCKLVADAVERHALRA--------- |
10 | 6i2mA | 0.22 | 0.16 | 5.01 | 1.17 | DEthreader | | --------MN-NSSELIAVINGFRNSGRFCDISIVINDERINAHKLILSGASEYFSILFSFDSNE-----YEVNLSHLDYQSVNDLIDYIYGIPLSLTNDNVKYILSTADFLQIGSAITECENYILKNLCSKNCIDFYIYADKYNNKKIESASFNTILQNILRLINDENFKYLTEESMIKILSDDMLNIKNEDFAPLILIKWLESTQ--------------------------------------------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|