Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300
| | | | | | | | | | | | | | | |
| SS Seq | CCCCCCCSSSSSSSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCCSCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHSSCCCCCCCCCCCSSSHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCC MRQINQTQVTEFLLLGLSDGPHTEQLLFIVLLGVYLVTVLGNLLLISLVHVDSQLHTPMYFFLCNLSLADLCFSTNIVPQALVHLLSRKKVIAFTLCAARLLFFLIFGCTQCALLAVMSYDRYVAICNPLRYPNIMTWKVCVQLATGSWTSGILVSVVDTTFILRLPYRGSNSIAHFFCEAPALLILASTDTHASEMAIFLMGVVILLIPVFLILVSYGRIIVTVVKMKSTVGSLKAFSTCGSHLMVVILFYGSAIITYMTPKSSKQQEKSVSVFYAIVTPMLNPLIYSLRNKDVKAALRKVATRNFP |
1 | 4zwjA | 0.16 | 0.15 | 5.08 | 1.33 | DEthreader | | -TDEGPNFSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCK-PMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP-----LQCSCGIDY--YT-LK-PEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAATQKAEKEVTRMVIIYVIAFLICWVPYASVAFYIQCFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKN |
2 | 6me6A2 | 0.19 | 0.17 | 5.46 | 2.14 | SPARKS-K | | ---------------DGARPSWVAPALSAVLIVTTAVDVVGNLLVILSVLRNRKLRNAGNLFLVSLALANLVVAFYPYPLILVAIFYDGWAFGEEHCKASAFVMGLSVIGSVWNITAIAIDRYLYICHSMAYHRIYRRWHTPLHICLIWLLTVVALLPNFFVGS-------------LEYDPRIYSCTFIQTA-STQYTAAVVVIHFLLPIAVVSFCYLRIWVLVLQARLKPSDLRSFLTMFVVFVIFAICFAPLNCIGLAVAIIPEGLFVTSYLLAYFNSCLNPIVYGLLDQNFRREYKRILLALWN |
3 | 3dqbA | 0.17 | 0.16 | 5.15 | 0.66 | MapAlign | | ------VRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCK--PMSNFFGENHAIMGVAFTWVMALACAAPPLWSRY------IPEGMQCSC---GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAATQKAEKEVTRMVIIMVIAFLICWLPYAGVAFIFTHQGSDFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGK- |
4 | 3dqbA | 0.16 | 0.16 | 5.27 | 0.39 | CEthreader | | SNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACAAPPLVGW----SRYIPEGMQCSC---GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAATQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN |
5 | 5nddA2 | 0.16 | 0.15 | 4.97 | 1.65 | MUSTER | | ----EFFSVDEFSASVLTG-KLTTVFLPIVYTIVFVVALPSNGMALWVFLFRTKKKAPAVIYMANLALADLLSVIWFPLKIAYHIHGNNWIYGEALCNVLIGFFYANMYCSILFLTCLSVQRAWEIVNPMGHS-RKKANIAIGISLAIWLLILLVTIPLYVV-KQTIFIPALQITTCHDVLP-----EQLLVGDMFNYFLSLAIGVFLFPAFLTASAYVLMIRALNS---EKKRKRAIKLAVTVAAMYLICFTPSNLLLVVGQSHVYALYIVALCLSTLNSCIDPFVYYFVSHDFRDHAKNAL----- |
6 | 6kp6A | 0.20 | 0.18 | 5.71 | 1.35 | HHsearch | | --------------------TVEMVFIATVTGSLSLVTVVGNILVMLSIKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTVYTIKGYWPLGAVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPARRTTKMAALMIAAAWVLSFVLWAPAILFWQFVVGKR--TVPDNQCFAQ---------FLSNPAVTFGTAIAAFYLPVVIMTVLYIHIYLASRSRVHAARERKVTRTIFAILLAFILTWTPYNVMVLVNTCIPDTVWSIGYWLCYVNSTIRPACYALCNAEFKKTFRHLLLCQ-- |
7 | 3emlA1 | 0.17 | 0.15 | 4.92 | 2.24 | FFAS-3D | | -----------------------SSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQSQGCGEGQVACLFEDVVPMN---------YMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHV- |
8 | 2ks9A | 0.14 | 0.13 | 4.45 | 0.93 | EigenThreader | | SDLSPNISTNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQP--RLSATATKVVICVIWVLALLLAFPQ-----GYYSTTETMPSRVVCMIE-------WPEIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITL---WASSAKRKVVKMMIVVVCTFAICWLPFHIFFLLLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPF |
9 | 4ww3A | 0.17 | 0.16 | 5.35 | 1.69 | CNFpred | | WWYNPSIVVHPHWREFDQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLE----GVLCNCSFDYISRD-----STTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEK-NAEMRLAKISIVIVSQFLLSWSPYAVVALLAQ-VTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLT |
10 | 2ks9A | 0.13 | 0.13 | 4.36 | 1.33 | DEthreader | | --------TNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHP-L-QPRLSATATKVVICVIWVLALLLAFPQGYYS-TT-E---T-PSRVVCMI--EWPE-HPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWSEDRYSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPPYFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPF |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|