Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCSSSSCCCCCCCCHHHHHHHHHCCCCSSSSSSSSCCCCCCCCSSSSSSSCCHHHHHHHHHHHCCCSSCCSSSSSSSCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCSSCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC MATFSGPAGPILSLNPQEDVEFQKEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLRMEERFKKKERLLRKKLAKKGIDYDFPSLILQKTESISKTNRQTSTKGQVLRKKKKKVSGTLDTPEKTVDSQGPTPVCTPTFLERRKSQVAELNDDDKDDEIVFKQPISCVKEEIQETQTPTHSRKKRRRSSNQ |
1 | 6c0fo | 0.34 | 0.15 | 4.60 | 1.67 | FFAS-3D | | -----------------------------------------EYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESMNNYLLMGHLLQVRVLPKGAKIEKLYKYKKRVLVEKGITKPVK-----------QLKDNMKQKHEERIKKLAKSGIEFKW------------------------------------------------------------------------------------------------------------ |
2 | 4pkdB | 0.14 | 0.11 | 3.61 | 1.05 | SPARKS-K | | ----------------------------------------TRPNHTIYINNLNEKILKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA--KTDSDIIAKMKG-TFVEETREERMERKRREKIERRQQEVETELK-------------------MWDPHNDPNAQGDAFKYDTTESKLRREFEVY-GPIKRIHMVYSKRSGKPRGYAEYEHERHSAYKHADGDGRRVLVDVERGRT------VKGWRPRRLGGGLGGTRRG |
3 | 6c0fo | 0.34 | 0.15 | 4.60 | 1.14 | SPARKS-K | | -----------------------------------------EYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESMNNYLLMGHLLQVRVLPKGAKIEKLYKYKKRVLVEKG--------ITKP---VKQLKDNMKQKHEERIKKLAKSGIEFKW------------------------------------------------------------------------------------------------------------ |
4 | 6es4A | 0.24 | 0.06 | 2.02 | 1.54 | CNFpred | | ---------------------------------------------EVFCGKIPKDMYEDELIPLFENMGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQLDNHEIKGKCLKINISVP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
5 | 6c0fo | 0.34 | 0.15 | 4.60 | 1.09 | HHsearch | | -----------------------------------------EYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESMNNYLLMGHLLQVRVLPKGAKIEKLYKYKKRVLVEKGI--------TKPVK---QLKDNMKQKHEERIKKLAKSGIEFKW------------------------------------------------------------------------------------------------------------ |
6 | 3h2uB | 0.17 | 0.13 | 4.29 | 0.34 | CEthreader | | FVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP----------ALLHSRCLCVDRLPPGFNDVDALCRALS-------------------AVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALIAAQATA---------------------------------- |
7 | 4wijA | 0.10 | 0.08 | 2.91 | 0.92 | EigenThreader | | LPADITAKYGEPLESRALAEIAKAELD--------DTPMRGTHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDD---RGRSKGIVEFASKPAARKAFERCSEGVFLLRPVIVEPLEQ---LDKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLMRRQEELRRMEELH-----------------------NQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQM------------------------ |
8 | 5t9pB | 0.35 | 0.12 | 3.67 | 1.38 | FFAS-3D | | ----------------------------------------EEYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESMNNYLLMGHLLQVRVLPKGAKIEKLYKYKKRVLVEKG------------------------------------------------------------------------------------------------------------------------------------------------------- |
9 | 5t9pA | 0.41 | 0.12 | 3.62 | 1.53 | CNFpred | | --------------------------------------------GIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESMNNYLLMGHLLQVRVLPKGAKIEKLYK----------------------------------------------------------------------------------------------------------------------------------------------------------------- |
10 | 7jtvB | 0.04 | 0.03 | 1.41 | 0.67 | DEthreader | | LYFLAYGTVQNAAH--VPSSRTRTRSVELGGAYGQDTTSLLWLWDAVRQN------RYPMDKADARFQETFVA------------------DAIV----------------------------AGAA------QRQSMPVSGSEE-TL--TLTLPSQGFTAVGLNTQRIGS-TRLWNTRQYDRPRFLKSPD---------------------IKLQ-ANQSVALVSVTGAASQPFLEHAKVEKVRGSIDKDYG----------RFRELNEDDATLGYLHQSNKAYGYAQRPG- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|