Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380
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| SS Seq | CSSSSSSCCCCCCHHHHHHHHHHHHCCSSSSSSSSSCCCCHHHHHHHHHHHHHHHHHHHHHCCCSSSSSSSCCCHHHHHHHHHHHHCCCCCCCCSSSSCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCSSSCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCHHHCCCSSSSSSSCCCCCCHHHHHHHHHHHHHHHCCCCSSSSSSCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHCCCCCCSSSSSCCCCCCCCCCHHHHHHHHHHHHCCCCCSSSSSCCCCSSSCCC PQLLLLVGNPRGALPLLRLANQLKKGGLYVLGHVTLGDLDSLPSDPVQPQYGAWLSLVDRAQVKAFVDLTLSPSVRQGAQHLLRISGLGGMKPNTLVLGFYDDAPPQDHFLTDPAFSEPADSTREGSSPALSTLFPPPRAPGSPRALNPQDYVATVADALKMNKNVVLARASGALPPERLSRGSGGTSQLHHVDVWPLNLLRPRGGPGYVDVCGLFLLQMATILGMVPAWHSARLRIFLCLGPREAPGAAEGRLRALLSQLRIRAEVQEVVWGEGAGAGEPEAEEEGDFVNSGRGDAEAEALARSANALVRAQQGRGTGGGPGGPEGGDAEGPITALTFLYLPRPPADPARYPRYLALLETLTRDLGPTLLVHGVTPVTCTDL |
1 | 6nplA2 | 0.23 | 0.19 | 5.81 | 1.17 | DEthreader | | PQCLVMTGAPNSRPAILHLVHAFTNVGLMLCGHVRISS-RRPNFKELNSDMLRYQRWLLNNNSKAFYTCVVAEDLRQGTQYMLQAAGLGRLRPNTLVIGFKNDWRI-----------------------------------G--DIKEVETYINLIHDAFDFQYGVVILRLREGLDSQQFQQ----KQGKGTVDVWWLF-----------DDG-GLTLLIPYLIANKKKWKDCKIRVFIGG-KINRIDHDRRAMATLLSKRIDFSDITVLGDINTKPKSLTFAEKRITDN-ELELYKAKGNRQIRLNELLKEHS--S---------------T-ANLIVMSMPLARKGAVSSALYMAWLDTLSKDLPPILLVRGNHQSVLTFS |
2 | 6nplA2 | 0.24 | 0.20 | 6.11 | 2.35 | SPARKS-K | | PQCLVMTGAPNSRPAILHLVHAFTKNGLMLCGHVRISS-RRPNFKELNSDMLRYQRWLLNNNSKAFYTCVVAEDLRQGTQYMLQAAGLGRLRPNTLVIGFKNDW-------------------------------------RIGDIKEVETYINLIHDAFDFQYGVVILRLREGLDILLDSQQFQQKQGKGTVDVWWL----FDD--------GGLTLLIPYLIANKKKWKDCKIRVFIGGKINR-IDHDRRAMATLLSKFRIDFDITVLGDINTKPKSEGLTEPWRITDNELELYKAKGNRQIRLNELLKEHSST------------------ANLIVMSMPLARKGAVSSALYMAWLDTLSKDLPPILLVRGNHSVLTFYS |
3 | 6y5rA2 | 0.26 | 0.20 | 6.12 | 1.45 | MapAlign | | PQLLVLLKLV-KHPRLLTFASQLKAGGLTIVGSVIVGNFLEN-YGEALAAEQTIKHLMEAEKVKGFCQLVVAAKLREGISHLIQSCGLGGMKHNTVVMGWPNGW------------------------------------RQSEDARAWKTFIGTVRVTTAAHLALLVAKNISFF------PSNVEQFSEGNIDVWWIV------------HDGGMLMLLPFLLKQHKVWRKCSIRIFTVA------MKKDLATFLYHLRI--EAEVEVVEMHDSDISAY---TYERDLMMEQRSNVRRMHTAVKLNEVIVNKSH------------------EAKLVLLNMPGPPRNPEGDENYMEFLEVLTEGLERVLLVRGGGSE----- |
4 | 6y5rA | 0.28 | 0.21 | 6.55 | 1.21 | CEthreader | | PQLLVLLKLDVKHPRLLTFASQLKAGGLTIVGSVIVGNFLEN-YGEALAAEQTIKHLMEAEKVKGFCQLVVAAKLREGISHLIQSCGLGGMKHNTVVMGWPNGWRQ------------------------------------SEDARAWKTFIGTVRVTTAAHLALLVAKNISFFP------SNVEQFSEGNIDVWWIV------------HDGGMLMLLPFLLKQHKVWRKCSIRIFTVA--------MKKDLATFLYHLRIEAEVEVVEMHDSDIS---AYTYERDLMMEQRSNVRRMHTAVKLNEVIVNKSH------------------EAKLVLLNMPGPPRNPEGDENYMEFLEVLTEGLERVLLVRGGGSE----- |
5 | 6nplA2 | 0.23 | 0.20 | 6.15 | 1.81 | MUSTER | | PQCLVMTGAPNSRPAILHLVHAFTKNGLMLCGHVRISSRRPNF-KELNSDMLRYQRWLLNNNSKAFYTCVVAEDLRQGTQYMLQAAGLGRLRPNTLVIGFKNDWRIGD-------------------------------------IKEVETYINLIHDAFDFQYGVVILRLREGLDISLDSQQFQQKQGKGTVDVWWL-----------FDDGG-LTLLIPYLIANKKKWKDCKIRVFIGGK-INRIDHDRRAMATLLSKFRIDFSDITVLGDINTKPKSEPYKLREDDMEQEAAEKLKSEEPWRITDNELELYKAKGNRQIRLNELLKEHSSTANLIVMSMPLARKGAVSSALYMAWLDTLSKDLPPILLVRGNHQSVLTFY |
6 | 6nplA2 | 0.25 | 0.21 | 6.39 | 4.05 | HHsearch | | PQCLVMTGAPNSRPAILHLVHAFTKNGLMLCGHVRISSRRPNF-KELNSDMLRYQRWLLNNNSKAFYTCVVAEDLRQGTQYMLQAAGLGRLRPNTLVIGFKNDWRIGD-------------------------------------IKEVETYINLIHDAFDFQYGVVILRLREGLDISHLNVQFQQKQGKGTVDVWWL-----------FDDGGL-TLLIPYLIANKKKWKDCKIRVFIGGKIN-RIDHDRRAMATLLSKFRIDFSITVLG-DINTKPKSEGAEEPWITDNELELYKAKGNRQIRLNELLKE-HSS-----------------TANLIVMSMPLARKGAVSSALYMAWLDTLSKDLPPILLVRGNHSVLTFYS |
7 | 6nplA2 | 0.22 | 0.19 | 6.01 | 2.98 | FFAS-3D | | PQCLVMTGAPNSRPAILHLVHAFTKNGLMLCGHVRISS-RRPNFKELNSDMLRYQRWLLNNNSKAFYTCVVAEDLRQGTQYMLQAAGLGRLRPNTLVIGFKNDWRIGD-------------------------------------IKEVETYINLIHDAFDFQYGVVILRLREGLDRLLDSQQFQQKQGKGTVDVWW------------LFDDGGLTLLIPYLIANKKKWKDCKIRVFIGGKINRI-DHDRRAMATLLSKFRIDFSDITVLGDINTKPKSEGLTEFAEMIEPYKLREDDMEQEAAETDNELELYKAKGNRQIRLNELLKEHSSTANLIVMSMPLARKGAVSSALYMAWLDTLSKDLPPILLVRGNHQSVLT-- |
8 | 6nplA2 | 0.22 | 0.18 | 5.61 | 1.23 | EigenThreader | | PQCLVMTGAPNSRPAILHLVHAFTKNVGLMLCGHVRISSRRPNFKELNSDMLRYQRWLLNNNSKAFYTCVVAEDLRQGTQYMLQAAGLGRLRPNTLVIGF-------------------------------------KNDWRIGDIKEVETYINLIHDAFDFQYGVVILRLREGLDILLDSQQFQQKQGKGTVDVWWLFDDGG------------LTLLIPYLIANKKKWKDCKIRVFIGGKRIDHDRRAMATLLSKF---RIDFSDITVLGDINTKPKLKSEEPWRITDNELELYKAKGNRQIRLNELLKEHS------------------STANLIVMSMPLARKGAVSSALYMAWLDTLSKDLPPILLVRGNHQSVLTFY |
9 | 6vw9A | 0.25 | 0.14 | 4.30 | 1.72 | CNFpred | | PQLLLLLSM-VRYLNLLNLASQLKAKGLTVVTAFLQGDPTSPDKKKGEQVKARMDFDMNQVRLRGFAKTLVHSQVRGSMSTLVQSVGLGGLKPNTMLISWPVHEREE---------------------------------------TEYNTFIEKVHAASINDMAIVVAKGIIDFPSAVF-------RMSGMIDVYWIVH------------DGGLCLLMGYLLKQHKVWRGCKLRVIGIAQESDNNVKMQEDLQKYVYQLRIDAKIMIVELAD------------------------------------------------------------------------------------------------------------- |
10 | 6nplA | 0.23 | 0.19 | 5.81 | 1.17 | DEthreader | | PQCLVMTGAPNSRPAILHLVHAFTNVGLMLCGHVRISS-RRPNFKELNSDMLRYQRWLLNNNSKAFYTCVVAEDLRQGTQYMLQAAGLGRLRPNTLVIGFKNDWRI-----------------------------------G--DIKEVETYINLIHDAFDFQYGVVILRLREGLDSQQFQQ----KQGKGTVDVWWLF-----------DDG-GLTLLIPYLIANKKKWKDCKIRVFIGG-KINRIDHDRRAMATLLSKRIDFSDITVLGDINTKPKSLTFAEKRITDN-ELELYKAKGNRQIRLNELLKEHS--S---------------T-ANLIVMSMPLARKGAVSSALYMAWLDTLSKDLPPILLVRGNHQSVLTFS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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