Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSCCCCCCCCCCCSSSSCCCCSSSSSSSSSSCCCCSSSSSSSSCCSSSSSSSSSCCCCCSSSSCSSSSSSCCCCSSSSSSSCCCCCCCSSSCCCCCCSSSSSSSSCCCCCC MGSRGQGLLLAYCLLLAFASGLVLSRVPHVQGEQQEWEGTEELPSPPDHAERAEEQHEKYRPSQDQGLPASRCLRCCDPGTSMYPATAVPQINITILKGEKGDRGDRGLQGKYGKTGSAGARGHTGPKGQKGSMGAPGERCKSHYAAFSVGRKKPMHSNHYYQTVIFDTEFVNLYDHFNMFTGKFYCYVPGLYFFSLNVHTWNQKETYLHIMKNEEEVVILFAQVGDRSIMQSQSLMLELREQDQVWVRLYKGERENAIFSEELDTYITFSGYLVKHATEP |
1 | 4pf1A | 0.04 | 0.03 | 1.60 | 0.83 | DEthreader | | ----------------------------FS--SDS-DIPEKFT-----RLRFNSMVVPQMNDTTAAYVAAKAVVP--AMDKMLA-QH-PLTVP-MLIVGGLFPNSLGP---------------DKAPKLDIPRYDDPPEEA-HYCDLYVQAFDEYVSDKPVPTASRT------------VLVWATLPLRVAGPVARLFASTSGSDADWVVKIIQMLSADIFRGRY-KPLVLEYRIPLQVSHTFRIMVQVQSSFRNPQTRKAT--QRVWRTAIEIH-IIS-- |
2 | 4oulA | 0.32 | 0.15 | 4.50 | 1.59 | SPARKS-K | | ------------------------------------------------------------------------------------------------------------------------------------------------RVAFSAARTSNLAPGTLDQPIVFDLLLNNLGETFDLQLGRFNCPVNGTYVFIFHMLKLANVPLYVNLMKNEEVLVSAYANDGAPHETASNHAILQLFQGDQIWLRLHRG-----AIYGSSWKYSTFSGYLLYQDL-- |
3 | 4douA | 0.20 | 0.19 | 5.94 | 2.16 | HHsearch | | YFAYHITVYM------KDVKVSLFKKDKLFTYDQQENNLEVGDQVWLQVYEGLYADNRSAFSVGLEMPNSTGKFH-CNIPGLYYFAYHITVYMDVSKKDKMLDQYQENNVDEVGDQVVYGRNGLYADNDNDGFLLYHDTNPYVYRSAFSVGLETY----IPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITV-YMKDVKVSLFKKDKAMLFTYDQQENNVDQASGSVLLHLEVGDQVWLQVYGEGERNGLYADN-DNDSTFTGFLLYHDT-- |
4 | 4d7yA | 0.29 | 0.13 | 4.01 | 0.95 | MapAlign | | -----------------------------------------------------------------------------------------------------------------------------------------------PRVAFYAGLKN---PHEGYEVLKFDDVVTNLGNNYDAASGKFTCNIPGTYFFTYHVLMRGGTSMWADLCKNGQVRASAIAQDAQNYDYASNSVILHLDAGDEVFIKLDGG---KAHGG-NSNKYSTFSGFIIYSD--- |
5 | 4douA | 0.18 | 0.14 | 4.40 | 1.23 | EigenThreader | | -------------------------------------------------------------AYVYRSETYVTMPIRFTQQNHSTGNIPYQENNVVGDERDNDNDSTNPGEGAYVYRSYQENNVVGDGEGERDNDNDSTNPYVYRSAFSVGLETYIPNMPIR-----FTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYM-KDVKVSLFKKDKAMLFTYDQYQENVDQASGSVLLHLEVGDQVWLQVYGEGE-RNGLYADNDNDSTFTGFLLYHDT-- |
6 | 4d7yA | 0.28 | 0.13 | 3.91 | 0.66 | CEthreader | | -----------------------------------------------------------------------------------------------------------------------------------------------PRVAFYAGLKNPHEG---YEVLKFDDVVTNLGNNYDAASGKFTCNIPGTYFFTYHVLMRGGTSMWADLCKNGQVRASAIAQDAQNYDYASNSVILHLDAGDEVFIKLDG----GKAHGGNSNKYSTFSGFIIYSD--- |
7 | 5kcaA | 0.16 | 0.12 | 3.91 | 1.18 | EigenThreader | | -----------------------------------------------------------------SAKVSTNHEPSEMSNRTMIIYFDKGDNLMGGWKYSSAKVSTNHEPSPRKNRQTIGDQDVTKGDNLMGGWKYSGSSGSAKVAFSAIRSTNHEPSEMTMIIY-FDQVLVNIGNNFDSERSTFIAPRKGIYSFNFHVVKVYRQTIQVSLMLNGWPVISAFAGDQDVTREAASNGVLIQMKGDRAKLERGNLM--------GGWKYSTFSGFLVFPLSDS |
8 | 1c3hA | 0.30 | 0.15 | 4.42 | 1.13 | MUSTER | | --------------------------------------------------------------------------------------------------------------------------------------------AYMYRSAFSVGLETRVTVP--NVPIRFTKIFYNQQNHYDGSTGKFYCNIPGLYYFSYHITVYM-KDVKVSLFKKDKAVLFTYDQYQKNVDQASGSVLLHLEVGDQVWLQVYGDGDHNGLY-ADNVNDSTFTGFLLYHDTN- |
9 | 5hkjA | 0.12 | 0.11 | 4.04 | 1.51 | SPARKS-K | | GFLIFPSAKFQSVFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHTANLCVLLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGIQGSDSVFSGFLLFPDGSAKATQKIAFSATRTIN-VPLRRDQTIRFDHVITNMNNNYEPRSGKFTCKVPGLYYFTYHASSRGN--LCVNLMRGRQKVVTFCDYAYNTFQVTTGGMVLKLEQGENVFLQATDKNS---LLGME-GANSIFSGFLLFPDM-- |
10 | 4f3jA | 0.30 | 0.14 | 4.22 | 1.21 | FFAS-3D | | --------------------------------------------------------------------------------------------------------------------------------------------------AFSAKRSESRVPPPSDAPLPFDRVLVNEQGHYDAVTGKFTCQVPGVYYFAVHATVY-RASLQFDLVKNGESIASFFQGGWPKPASLSGGAMVRLEPEDQVWVQVGVGDY--IGIYASIKTDSTFSGFLVYSDWHS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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