Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380
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| SS Seq | CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQNDNYSPSMTMSV |
1 | 3hr2B | 0.16 | 0.16 | 5.37 | 1.46 | SPARKS-K | | GIGGKGEKGETGLRGEIGNPGRDGARGAGAIGAGPAGASGDRGEAGAAGPSGPAGPRGSPGERGEVGPAGPNGFAGPAGSAGQGAGEKGTKGPKGENGIVGPTGPVGAAGPSGPNGPPGPDGGPPGMTGFGAAGRTGPGPSGITGPGPGAQGPVGRTGEIGASGPPGFAGEKGPSGEGTTGPGTAGPQGIAGALGEGPLGIAGPGARGPGAVGSGVNGAGEAGRDGNGSDGPGRDGQGHKGERGYGNIGPTGAAGAPGPHGSVGPAGGEPGPAGSVGPVGAVGPRGPSGRGDKGEPGDGARGLPGLK-GHNGLQGLPGLAGLHGDQGAPGPVGPAGPRGPAGPSKDGRSGHPGPVGPAGVRGSQGSQGPAGPGPGPGPPGVSGGG--- |
2 | 6iwvA | 0.98 | 0.17 | 4.69 | 3.26 | HHsearch | | --------AVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
3 | 3k1uA | 0.07 | 0.06 | 2.31 | 0.66 | CEthreader | | -------------------------------------------------------------------ILNPIIIQRADPIYKHNDGYYYFTASVPEYDRIEVRKAKTIEGLRNAEPVDVWRRHESGESNLIWAPEIHFINGAWYIYFAAAPDKNIEDDTFNHRFVIQNENENPFTGNWVEKGRIKTAWESFSLDATIFEHNEKLYYVWAQQDINIKGHSNIYIAEENPWTLKTKPVLTKPELEWEIKGFWVNEGPAVLKKNGKIFITYSASATDVNYCIGLTAEENSNLLDKNSWTKPVFKTSENHQYGPGHNSFTVSEDGKHDVIVYHARNYTEIKGDPLYDPNRHTRAQIINWREDGTPDFGVPEVDSL----------------- |
4 | 6vbu4 | 0.07 | 0.06 | 2.69 | 0.73 | EigenThreader | | IHLYYIQKDYEACKAVIKEQLQETH----GLCEYAIYVQALIFRLE--------GNIQESLRLFQMCAFLSPQCADNLKQVARSLFL---LGKHKAAIEVYNEAAKLNQKDWEICHNLGVCYIYLKQFDKAQDQLHNALHLNRHDLTYIMLGKIFLLKGDLDKAIEIYKKAVEFSPENTELLTTLGLLYLQLGIY---QKAFEHLGNTLTYDPTNYKAILAAGSMMQTHGDFDVALTKYKVVACAVIESPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPLDWKILYNLGLVHLTMQQYASAFHFLSAAINFQPKMGELYMLLAVALTNLEDSENAKRAYEEAVRLDKCNPLVNLNYAVLLYNQGEKRDALAQYQEMEKKVSSSLEF |
5 | 6iwvA | 0.98 | 0.17 | 4.69 | 0.57 | FFAS-3D | | --------AVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLYCAAP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
6 | 3hr2A | 0.17 | 0.17 | 5.65 | 1.46 | SPARKS-K | | GAGAGSQGAGLQGMGERGAAGLGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPAGAGDK--GEAGPSGPAGPTGARRGEAGPGPAGFAGPGADGQGAKGEGDTPAGPAGPGPIGNVGAGPGSRGAAGPGATGFGAAGRVGPGPSGNAGPGPGPPRGETGPAGRGEVGPGPGPAGEKGSGADGPAGSGTPGPQGIAGQPSGASGERGPGPMGPGLAGPGESGREGSGAEGSGRDGAGAGAPGPVGPAGKNGDRGETGPAGPAGPIGGARGPAGPQGPRGDGETGEQGDRGIGHRGFSGLQGPGS-GSGEQGPSGASGPAGPRGPGAGSGKDGLNGLGPIGG-PRGRTGD-SGPAGPGPGPGPPSGGYDFSFLPQPPQEKSQDGGRYY |
7 | 1dkaA | 0.09 | 0.02 | 0.69 | 0.33 | CNFpred | | ---------------LPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITREC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
8 | 5cskA | 0.07 | 0.05 | 2.03 | 0.67 | DEthreader | | ---------------------RVHIVEGILMAANVCVASFMFGFKDGS-----------YPKYYIRHIEPALAFQLE-G-LSFNIKPIIHVFFTR-MS--LD--------EVTDTSNSDNLRVSSNNGVIK---GSKEWLQPRYYDFELFQASSQWLFFVKTPE---------------------YPRGRQFVVVFKVEYARKR----GIP-RIYLA-NGSGLAGATSRAYHDI-T--T-----LVTCRSVGGAQVEGQ--------GTQMYNLTAVDAGEK-E-----ETKDTWDRPVMIEGRFEYGLFLM-L---YIPPTGVDPMEMYADVSSRMVKGVISK--FFWRLRRRLNEYLILIAIRHDDQVATWIEENY---------- |
9 | 6xn0A | 0.06 | 0.05 | 2.08 | 0.92 | MapAlign | | --------------------------------------------------------------------------------------ALARTAISAPLVTHLYTADPSAHVFDGALYIYPSHDLDHFDMADYHV-LRMAHPGAAVEDLGQVLHVRDVPWAQRQMWAPDAAQRNGKTYLYFPAKRADGMFQIGVAVGDRPEGPF------VAEPQPIAGTYSIDPAVLADDDGAHYLYFGGIWGGQLQHYRDNAYAHQEPVGDAPALGPRVARLHERMIDLAEPSREVVILDEHGTPLGPWVHQHAGRYYLSYSTGDTHRICYAGPFTYQGVLLAPVVGWTTHHSICLFQQQWYLFYHDSVLSGGQTHLRSIKMAPLAHAADGTIATIYP |
10 | 2nbiA1 | 0.19 | 0.17 | 5.48 | 0.84 | MUSTER | | QPSDLNPSSQPSECDVLEECPI--------------------ECFLPYS-DASRPPS-------------CLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDCDVLPFPNNLGCPACCPFECSPDNPMFTPSPDGSPPNCSPTMTPQPSTPTVITSPAPSSQPSSRPLDCTDPAVNRPLPTPQNPACCAFECRPDNPMFTPSPDGSPPSPTMMPSPEPSSQPSDCG----EVIEECPIDACFLPKSDSARPPDCTAVGRPD---NVLPFPNNIGCPSCCPFECSP-DNPMFTPSPDGSPPNCSPTPSPSAVTVPLTPAPS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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