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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.03 | 1ik9B | 0.547 | 3.35 | 0.137 | 0.820 | 1.07 | III | complex1.pdb.gz | 30,31,33,34,37,38,41 |
| 2 | 0.02 | 1ic20 | 0.614 | 2.38 | 0.065 | 0.770 | 0.97 | III | complex2.pdb.gz | 27,30,31,34,37,38,41,42,44,45,48,49,51,52,55,58,59,62,63,67,70,74,77,81,87,88,93 |
| 3 | 0.02 | 2no20 | 0.624 | 3.22 | 0.031 | 0.890 | 0.98 | III | complex3.pdb.gz | 35,38,41,42,44,45,48,49,51,52,58,59,62,65,67,70,71,73,74,77,80,81 |
| 4 | 0.02 | 1pl50 | 0.604 | 1.91 | 0.028 | 0.720 | 0.99 | III | complex4.pdb.gz | 24,34,35,41,44,45,48,51,52,55,58,59,62,63,66,69,70,72,73,76,80,81,91 |
| 5 | 0.01 | 1hvvC | 0.494 | 2.36 | 0.048 | 0.620 | 0.85 | TAR | complex5.pdb.gz | 29,30,32,33 |
| 6 | 0.01 | 1zv8C | 0.412 | 1.75 | 0.043 | 0.460 | 1.08 | III | complex6.pdb.gz | 34,37,40,41,44,47,48,51,52,54,55,58,59,62,65,66,70,74,77 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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