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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.49 | 2e9x1 | 0.865 | 0.85 | 0.980 | 0.883 | 1.94 | III | complex1.pdb.gz | 59,83,87,90,93,94,97,101,104,125,126,129,132,133,136,137,140,144,145,148,149,150,151,153,155 |
| 2 | 0.49 | 2e9x6 | 0.865 | 0.85 | 0.980 | 0.883 | 1.88 | III | complex2.pdb.gz | 27,31,34,35,38,39,57,73,74,76,77,78,80,81,84,87,88,166,168,169,170,172,184,186,187,188,192,196,202,203,204,205,207,223 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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