Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSSCCCCCCHHHHHHHHHHCCCCCCSSSSSSCCCCCCHHHHHHHHCCCCCCCSSSSSSCCCSSSSCCCCHHHHHHHHHHHCCCCCCSSSSSCCCCCCHHHHHHHHCCCHHHCCCSSSCCSSSSSSHHHHHHHHHCCCCCHHHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHCCCCSSSSSSCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC MLPAVGSADEEEDPAEEDCPELVPIETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKGKFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADAILINKTDLVPEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHL |
1 | 1nijA | 0.32 | 0.26 | 7.69 | 1.17 | DEthreader | | ---------------------------------------NPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE----FGE-VSVDDQ--LIGATQIKTLTNGCICCSRSNELEDALLDLLDNLDQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM--NQ---F-TIAQSQVGYADRILLTKTDVAG--EAEKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEKLFQGVQRLYFIGIQL--- |
2 | 1nijA | 0.34 | 0.28 | 8.31 | 1.08 | MUSTER | | ---------------------------------------NPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLI-----GDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQF------TIAQSQVGYADRILLTKTDVAGE--AEKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIADKQND |
3 | 1nijA | 0.35 | 0.28 | 8.30 | 1.85 | FFAS-3D | | ---------------------------------------NPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLI-----GDRATQIKTLTNGCICCSRSNELEDALLDLLKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQF------TIAQSQVGYADRILLTKTDVAGE--AEKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIADKQN- |
4 | 4ixnA | 0.35 | 0.26 | 7.63 | 1.47 | CNFpred | | --------------------------------------MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIANEFGEV-SVDDQLIG----DRATQIKTLTNGCIAASRSNELEDALLDLLDNLIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ------FTIAQSQVGYADRILLTKTDVA--GEAEKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFM--------------------- |
5 | 5a4jA | 0.10 | 0.09 | 3.13 | 1.00 | DEthreader | | -----------------------L--------FE-DK--KDAKLILTTAPTGEGKTTTTVGLGDARRKNAMIALREPSPVGGAAMEDIFTGDALKDAFKPNLVQGPAFVHGGPAHGCNSIIATKMALKLADYVVTEAGFGALAEKFLDIKCRM--AD--IRPDAVVIVATIRALKYNGGV-----GLPNLLKHVEITTVVAINQFPTDTERELALVQEECNR--LGVNAVLSEWKGGLLAKEVVRIIEEGKNNFKPIY-IKEIYGADGIA |
6 | 4lpsA | 0.16 | 0.12 | 4.07 | 0.90 | SPARKS-K | | -----------------------SKNDIKAAEMKERYLKEGLYVLNFMSSPGSGKTTMLENLA-DFKDFKFCVVEGDLQTN--RDADRLRKKGVS----AHQITTGEACHLEASMIEGAFDLLKDEGEKSDFLIIENVGNLV-----------CPSSYNLGAAMNIVLLSVPEGDD---------KVLKYPTMFMCADAVIISKADMVEVFRVSQVKEDMQKLKPEAPIFLMSSK-------------DPKSLEDFKNFLLEKKRENYQS |
7 | 1nijA | 0.35 | 0.26 | 7.62 | 0.84 | MapAlign | | ----------------------------------------PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEF--GEVSVDDQLIG---DRATQIKTLTNGCICCSRSNELEDALLDLLDNLIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ------FTIAQSQVGYADRILLTKTDVA--GEAEKLHERLARINARAPVYTVTHGDIDLGLLFNTNGF---------------------- |
8 | 1nijA | 0.33 | 0.27 | 8.11 | 0.70 | CEthreader | | ---------------------------------------NPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRA-----TQIKTLTNGCICCSRSNELEDALLDLLDNLDQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ------FTIAQSQVGYADRILLTKTDVAG--EAEKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIADKQND |
9 | 1yraB | 0.16 | 0.14 | 4.54 | 0.80 | MUSTER | | ----------------------------MRGSHHHHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLENYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGNGAISYDRLMEKFNEYLNKILRLKENDYVLIDTPGQMETFLFH---EFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYL------------TARLKLDPSMQGLMAYKMCSMMTEVLPPVRVL |
10 | 1nijA | 0.34 | 0.27 | 8.10 | 1.00 | HHsearch | | ---------------------------------------NPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEV-SVDDQLIG----DRATQIKTLTNGCICCSRSNELEDALLDLLDNNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ------FTIAQSQVGYADRILLTKTDVAGE--AEKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVVSTK-PRFHFIADKQN |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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