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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.01 | 3rzfA | 0.262 | 7.00 | 0.041 | 0.454 | 0.14 | XNM | complex1.pdb.gz | 75,113,130 |
| 2 | 0.01 | 1f5nA | 0.352 | 6.38 | 0.038 | 0.543 | 0.20 | GNP | complex2.pdb.gz | 124,129,130 |
| 3 | 0.01 | 3cmvD | 0.255 | 6.86 | 0.050 | 0.429 | 0.17 | ANP | complex3.pdb.gz | 82,83,127 |
| 4 | 0.01 | 1hkbA | 0.329 | 6.73 | 0.022 | 0.552 | 0.20 | G6P | complex4.pdb.gz | 106,123,124 |
| 5 | 0.01 | 3cmvA | 0.211 | 7.11 | 0.040 | 0.361 | 0.11 | ANP | complex5.pdb.gz | 109,111,112,113,114 |
| 6 | 0.01 | 3cmvD | 0.255 | 6.86 | 0.050 | 0.429 | 0.11 | ANP | complex6.pdb.gz | 75,76,113 |
| 7 | 0.01 | 1bg3B | 0.348 | 7.06 | 0.048 | 0.606 | 0.19 | G6P | complex7.pdb.gz | 71,124,125 |
| 8 | 0.01 | 3cmvH | 0.211 | 7.21 | 0.040 | 0.364 | 0.16 | ANP | complex8.pdb.gz | 80,81,83 |
| 9 | 0.01 | 3cmvB | 0.286 | 7.13 | 0.038 | 0.500 | 0.15 | ANP | complex9.pdb.gz | 78,80,127 |
| 10 | 0.01 | 3cmvA | 0.211 | 7.11 | 0.040 | 0.361 | 0.13 | ANP | complex10.pdb.gz | 80,82,83,84,85 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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