Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320
| | | | | | | | | | | | | | | | |
| SS Seq | CCHHHCCCCCCCCCHHHCHSHHHHCCCCCCCCCCCCSSCCCHHHHHHHCSCHCHHHHHHCCCSCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCSSCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCSSSSSCCCCCCSSSCCCCCCHHHHHHHHHCCCCCSSSSSSCCCCCC MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCSNASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAMAIDPVMDGASEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQFTVLNGSFSLELVSEKYWKVNKPMELYYAPTKEHK |
1 | 3h8hA | 0.98 | 0.27 | 7.51 | 1.45 | SPARKS-K | | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SEIELVFRPHPTLMEKA---QTRYIKTSGNATVDHLSKYLAVRLALEE------------LTASEKQYTIYIATASGQFTVLNGSFSLELVSEKYWKVNKPMELYYA------ |
2 | 6wi7A | 0.69 | 0.32 | 9.23 | 1.06 | SPARKS-K | | -----------PLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRTTELNPHKTCIVRYLETHKTRPLLNIRKTLQDIVYKLNEMKRRRDFYAAHPS----------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
3 | 3gs2A | 0.99 | 0.32 | 9.00 | 1.64 | CNFpred | | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDT--EKQYTIYIATASGQFTVLDGSFSLELVSEKYWKVNKPMELYYAPTK--- |
4 | 2na1A | 0.17 | 0.07 | 2.36 | 2.08 | HHsearch | | ----------------------------------------------------------------------------------------------------------PQILTHVIEGFVIQEGAE--PFPV---GRS------SLLVGN-------------------LKG---DKRIITDDEIISLSIEFFDQN-----RLDRK------------VN----K----------DKEKSKEEVNDKRYLRCPAAMTVMHLRKFLRSKMDIPNTF----------------QIDVMYE---EE--PLKDYYTLMDIAYIYWRRNGPLPLKYRVRPTC- |
5 | 5gmkq | 0.06 | 0.05 | 2.30 | 0.62 | CEthreader | | ------------------------------------------------MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPL-SIEEIVEIVPSAQQASSIPNLLTSLQNEWDAIMLENFKLRSTLDSLTKKLSTVMYERDAAKLVAAQLLMEKNEDSKDLPKSSQQDFVARGKLKAPKWPILKNLELLQKTFPYKEKWVCMCRCEDGALHFTQLKTITTITTPNPRTGGEHPARLLLLYPSKTNKVLREMYGHNEVNTEYFIWADNRGTIGKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFKEVKFADNGY |
6 | 5ejrA | 0.07 | 0.06 | 2.52 | 0.78 | EigenThreader | | GTDSQLAQWASTRFRSFKRASTLNQQQATLKRKAPV----DPNTAFYFNKD----PIKESLI---EMEAKLSKKAIKNFSEIMMWMGDYPIPK---GQTNHELRDEIYCQAYRQTNKESAKKGFELIYFLSITFSPSDSLLQPFMEQLMSRNIAIQ----------------SSSPQLASLIAVCIEKLESHPIPSYQQRKMGPSATEIQSFRSNLENGD--ISTCKIRF----------IDQSTKLAKINTYTTIREITDTVCRQYG--------------ISQQSIKMFGISAVNETAGIKVVSETDMIYDVLARWEQSEEKGEFQVRRRFFLD |
7 | 2h0dB | 1.00 | 0.30 | 8.33 | 0.85 | FFAS-3D | | --------------KTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIY------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
8 | 2na1A | 0.17 | 0.07 | 2.16 | 1.23 | SPARKS-K | | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PQILTHVIEGFVIQEGAEPFPVGRSSLLVGNLKGDKRIITDDEIISLSIEFFDQEKSKEEVNDKRYLRCPAAMTVMHLRKFLRSKMDIP----------------NTFQIDVMY---EEE--PLKDYYTLMDIAYIYWRRNGPLPLKYRVRPTC- |
9 | 3h8hA | 1.00 | 0.27 | 7.67 | 1.37 | CNFpred | | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SEIELVFRPHPTLMEK---AQTRYIKTSGNATVDHLSKYLAVRLALEEL------------TASEKQYTIYIATASGQFTVLNGSFSLELVSEKYWKVNKPMELYYA------ |
10 | 7askF | 0.05 | 0.04 | 1.68 | 0.67 | DEthreader | | ARTAVPVLQLYCHHVAVIRD--EGP----------ARWQ--RPFVREHDYRVAFNPDNWQRELLDIVDVVKFISYYCMYKALRRTN-------DYCPDFEVHLLP-SE--G-----KS-IQRWND--IKKYIYYIRDLHP----------PPDISLVSEVVSLFHQLMLISYAEVKNAFAYA-----E-----PGSRQIREHI--EDCAGDHILLNPTSSMTVIKGNVQDSRLLQLYW--------LFFQGRNSAGGNMEGFTVEWLQMLLGFQDAMYVFREAHVGNEGFSFI----------R-------------------------MLTSGFD |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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