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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.02 | 1pvh0 | 0.208 | 3.61 | 0.262 | 0.233 | 0.23 | III | complex1.pdb.gz | 92,93,94,95 |
| 2 | 0.01 | 1ncg0 | 0.092 | 3.45 | 0.045 | 0.102 | 0.31 | III | complex2.pdb.gz | 65,97,98,116,119 |
| 3 | 0.01 | 1mq80 | 0.186 | 3.15 | 0.112 | 0.202 | 0.17 | III | complex3.pdb.gz | 63,64,65,107 |
| 4 | 0.01 | 3cmvE | 0.186 | 8.84 | 0.041 | 0.295 | 0.17 | ANP | complex4.pdb.gz | 39,40,66 |
| 5 | 0.01 | 2b4h0 | 0.110 | 5.19 | 0.012 | 0.136 | 0.10 | III | complex5.pdb.gz | 126,127,128,129,201,202,203,204,205 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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