Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSCCSSSSCCCCCCCCCCCCCCCCCCCCCCSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSCCCCCCCCCCCCCCCCCCC SLLMHCPCYGSEWGLWWRSQDLAPSPSGMAGLSFGTPTLDEPWLGVENDREELQTCLIKEQLSQLSLAGALDVPHAELVPTECQAVTAPVSSCDLGGRDLCGGCTGSSSACYALATDLPGGLEAVEAQEVDVNSFSWNLKELFFSDQTDQTSSNCSCATSELRETPSSLAVGSDPDVGSLQEQGSCVLDDRELLLLTGTCVDLGQGRRFRESCVGHDPTEPLEVCLVSSEHYAASDRESPGHVPSTLDAGPEDTCPSAEEPRLNVQVTSTPVIVMRGAAGLQREIQE |
1 | 3awmA | 0.11 | 0.11 | 3.92 | 0.44 | CEthreader | | RVRALAQLFEAEWRRAVPGWTRKGEIVFYDELHEPLTRAVCAWAGVPLPDDEAGNRAGELRALFDAAGSASPRHLWSRLARRRVDAWAKRIIEGIRAGSIGSGSGTAAYAIAWHRDRHDDLLSPHVAAVELVNVLRPTVAIAVYITFVAHALQTCSGIRAALVQQPDYAELFVQEVRRFYPFFPAVVARASQDFEWEGMAFPEGRQVVLDLYGSNHDAATWADPQEFRPERFRAWDEDSFNFIPQGGGDHYLGHRCPGEWNAMRYDVPDQDLSIDFARLPALPKSGF |
2 | 6t58A | 0.07 | 0.07 | 2.79 | 0.53 | EigenThreader | | KEGDKFKLNKSELKELLTRELPSFLTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCYCVFLSCIAMMCNEFFEGFTTNFDAERDALNIETAIKTKGVDEVTIVNILTNRSNEQRQDIAFAYQRRTKKELASALKSALSGHLETVILGLLKTPAQYDASELKASMKGLGTDICSRTNQELQEINRVYKEMYKTDLEKDIISDTAKGRRAEDGSVIDYELIDQDARDLYDAGVKRKGTDIMTERSVPHLQKVFDRYKSYSPYDMLESIRKEVKGDLENAFLNL |
3 | 4bmlA | 0.07 | 0.06 | 2.53 | 0.41 | FFAS-3D | | SKQFMFTGKLSAGYHTPGTPIVGDAGIKANEKTL---VMDDLLYSTRAEVSKQIGEALATHYDERIARVLAKAS------------AEASPVTGEPGGFHVNIGAGNTNDAQAIVDGFFEAAAVLDERSAPQE-----GRVAVLS----------PRQYYSLISSVDTNILNREIGNSQGDMNSGKGLYS-----IAGIRI-------LKSNNLAGLYGQDLSSAAVTGENNDYQVDASALAGLIFHREA----AGCIQSVAPTIQTTSGDFNVQYQGDLIVGKLA- |
4 | 3iytA2 | 0.09 | 0.09 | 3.28 | 0.99 | SPARKS-K | | EVMVLAVDHIRRLQLINGRTGQIDYLT-EAQVSCCCLSPHLQYIAFGDENGAIEIELVNNRIFQSRFQHKKTVWHIQFTADEKTLIEIQVWNWQLDKCIFLRGHQETV---KDFRLLKNSRL-----LSWSFDVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSAKTAKIWSFDLLPLHELRGHNGCVRC-SAFSVDSTLLATGDDNGESNGEL----LHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIKWW----NVVTGESSQTFYT---- |
5 | 5irlA | 0.20 | 0.05 | 1.45 | 0.44 | CNFpred | | -------------------------------------------------AQALASMLEKN-------------VALEELCLAANHLQDA----------------GVCSLAEGLKR-------------------NSSLKVLKLSNN-CITFVGAEALLQALA---------------------------------------------------------------------------------------------------------------------------- |
6 | 7bwmA | 0.02 | 0.02 | 1.21 | 0.67 | DEthreader | | SAWALLLDFLNPQTPTRTFGGF----------PVEV-A--------------QDPSNPRFAVLYDAP-RNRTAIDR-VDHLDKAMTNYPWPWNHGDWKRDVLLQTTFNPRRHP-EWFDG-----------G---------------------QTVADNEKTGF-GFQKEAD--S------NNRWFEYVPRM-TITM--REDL-LAQPNSLFAAILLSRFSTGFNLVGS-LDTFSNIGVGLTGAGWRPNLADTNKNGLLNLITPWTPQDVGNLGWVNR-RVESVWDG- |
7 | 2yq2A | 0.05 | 0.05 | 2.08 | 0.84 | MapAlign | | --YAIAKNDRIGPLGAEGLTTVWKDYSPEMTLEDTMVIASCRDGKFMYLSRCTRETRYLAILHSRALPTSVVFKKLFEGQKQGDTVEMDDDFEFGLCTLLNGPAFQMVCPIGWTGTVSCMLANRDTLDTAVVRTYRR-------SRPFPYRQGCITQKVLGEDLYDCILGGNWTCVTGDQLQYSGGSI--ESCKWCGFKFQRSEGLPHYPIGKCRLKNETGYRLV-------------------------------DNTSCNREGVAIVPQGTVKCKIGDTTVQVIA |
8 | 2nbiA | 0.15 | 0.15 | 5.02 | 0.76 | MUSTER | | SQPSECADVLEECPIDECFLPYSDASRPPSCLSFGRPDCDVPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDCDVLPFPNNLGECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTTVITSPAPSSQPSQCAEVIEQCPIDECFLPYGDSSRPLD-CTDPAVNRPDCDVLPTPQNINCPACCAFECRPDNPMFTP---SPDGSPPICSPTM---PSPEPSSQPSDCGEVIE |
9 | 2pffB | 0.17 | 0.16 | 5.14 | 1.54 | HHsearch | | TTLVKTKELIKNYI--TARIM-AKRPFDFRAVGEGNAQLVAIFGGQGNYRDLYQTHVILEWLENPSNT--PDKDYLLSIPISCPL-----IGV-------------IQLAHYVVTAKLPGELRSADSWESFFVSVRKAITVLFFNEGVPSPMLSISNLTQEQVQKQSLVNGAKNLVVSGPTLRKAKASLDQSRIPFSELKFSNRFLPVASPFHSHLLVSDLINKDLVKNNVSFNAKDGSDLRVLSGSISERIVDCII-RLPV--KWETTTQFKATGPGAVLTHRNKD |
10 | 5d5hA3 | 0.08 | 0.07 | 2.59 | 0.39 | CEthreader | | -----------------DIDLVDAQETRRILDRLYGYEVSPVLWKKVAPKLSAGRVQSVATRIIVARERDRMAFNPPARYTEASLVKAIKTIQDRGYVHKKGSALVPSWVAFAVTGLLEQHFGRLVDYDFTAAMEDELDEIAAGNERRTNWLNNFYFGGDHGVPDSVARSGGLKKLVGIIDAREVNSIKLFDDTHGRPIYVRVGKGPYLERLVAGDTGEPTPQRANLSDSITPDELTLQVAEELFAT---------------------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|