Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC MEGSASPPEKPRARPAAAVLCRGPVEPLVFLANFALVLQVGGFLVGLFSSTLLGAWSDSVGRRPLLVLASLGLLLQALVSVFVVQLQLHVGYFVLGRILCALLGDFGGLLAASFASVADVSSSRSRTFRMALLEASIGVAGMLASLLGGHWLRAQGYANPFWLALALLIAMTLYAAFCFGETLKEPKS |
1 | 4ybqA | 0.13 | 0.12 | 4.24 | 1.33 | DEthreader | | -------KEEAEKAAMQSLRWQLISTIVLMAGQQSVNAIYATGAVNVFMTMVTVFVVELWGRRNLLLIGFSTCLTACIVLTVALALQISPYVSIVCVIVYVIG-HAVGPSPIPALFITEIFLQSSRPSAYMIGGSVHWLSNFIVGLIFPFIQVGLGP-YSFIIFAIICLLTTIYIFMVVPETKGR--- |
2 | 3wdoA1 | 0.18 | 0.16 | 5.21 | 2.26 | SPARKS-K | | ----------DYKMTPGERRATWGLGTVFSLRMLGMFMVLPVLTTQAVFQIPFGLLSDRIGRKPLIVGGLAVFAAGSVIAALS----DSIWGIILGRALQGSGA----IAAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIITHKLGLHALFWMIAILATTGIALTIWVVPNSSTHVLN |
3 | 6h7dA | 0.15 | 0.13 | 4.46 | 0.61 | MapAlign | | -----------------VTAFVIMTCIVAAMGGLLFGYDSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGALFNAFAVN----VSMLIIGRLLLGVG--VGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILVANLINYGTMAQHGWRVSLGLAAVPAVVMVIGSFI-LPDTSMLER- |
4 | 4apsA1 | 0.18 | 0.15 | 5.04 | 0.39 | CEthreader | | -----------------QPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRGARPAVFWGGVLIMLGHIVLAL----PFGASALFGSIILIII--GTGFLKPNVSTLVGTLYDEHRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL |
5 | 3wdoA1 | 0.19 | 0.18 | 5.66 | 1.46 | MUSTER | | -------DYKMTPGERRATWMFMVLPVLTTYEALIGIAIGIYGLTQAVFQIPFGLLSDRIGRKPLIVGGLAVFAAGSVIAALS----DSIWGIILGRALQGSGA----IAAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIITHKLGLHALFWMIAILATTGIALTIWVVPNSSTHVLN |
6 | 4zowA | 0.20 | 0.18 | 5.77 | 1.58 | HHsearch | | ----------------RLGRQALLFPLCLVLYEFSTYIGTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVVWFIVTCL----AILLAQNIEQFTLLRFLQGISLC--FIGAVGYAAIRESFEEAVCIKITALMANVALIAPLLGPLVGAAWIHVLPWEGMFVLFAALAAISFFGLQRAMPETATRIGE |
7 | 6t1zA1 | 0.17 | 0.14 | 4.72 | 1.97 | FFAS-3D | | ------------------------YYNQYLGSAITGILLALSAVATFVAGILAGFFADRNGRKPVMVFGTIIQLLGAALAIASNLPHVNPWSTFIAFLLISFGYN--FVITAGNAMIIDASNAENRKVVFMLDYWAQNLSVILGAALGAWLFR-PAFEALLVILLLTVLVSFFLTTFVMTETFKPT-- |
8 | 6h7dA2 | 0.11 | 0.11 | 3.84 | 1.05 | EigenThreader | | ------ENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMTGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQMFICQLLVGSFIGARFGPATADWILAFICVYVAGFAWGPLGWLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCH-MKFGLFYFFASMVAIMTVFIYFLLPETKGVPIE |
9 | 4apsA | 0.18 | 0.16 | 5.18 | 1.18 | CNFpred | | ------------------RFSYYGMRAILLYYMWAASIMAIYASMVYLSGTIGGFVADRIGARPAVFWGGVLIMLGHIVLALPF----GASALFGSIILIII--GTGFLKPNVSTLVGTLYDEHRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL |
10 | 7crzA | 0.15 | 0.14 | 4.81 | 1.33 | DEthreader | | -------DEARQE-LVSSYRQPIIISIVLQLSQQSINAVFSAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAFCSTLMTVSLLLKNGSFVCIGAILVFVAFF-EIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGLLFPSAAHY-LGAYVFIIFTGFLITFLAFTFFKVPETRGR--- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|