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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.02 | 2gl7A | 0.534 | 4.76 | 0.095 | 0.733 | 0.62 | III | complex1.pdb.gz | 103,111,115,117,130,134,137 |
| 2 | 0.01 | 2bptA | 0.514 | 5.09 | 0.079 | 0.713 | 0.67 | III | complex2.pdb.gz | 116,129,164,167 |
| 3 | 0.01 | 1ee4B | 0.512 | 4.85 | 0.077 | 0.706 | 0.47 | III | complex3.pdb.gz | 113,114,115,131,148 |
| 4 | 0.01 | 1i7x0 | 0.500 | 4.88 | 0.081 | 0.693 | 0.44 | III | complex4.pdb.gz | 127,128,132,171,173 |
| 5 | 0.01 | 1w9c0 | 0.439 | 4.88 | 0.091 | 0.622 | 0.43 | III | complex5.pdb.gz | 101,104,107,110,111,114,118,124,126,127,130,134 |
| 6 | 0.01 | 1jpwB | 0.492 | 4.94 | 0.069 | 0.686 | 0.42 | III | complex6.pdb.gz | 83,132,133,167,170 |
| 7 | 0.01 | 1qgk1 | 0.082 | 3.30 | 0.024 | 0.095 | 0.44 | III | complex7.pdb.gz | 122,125,126,127,130,134 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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