Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 620
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| SS Seq | CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCC MVVSADPLSSERAEMNILEINQELRSQLAESNQQFRDLKEKFLITQATAYSLANQLKKYKCEEYKDIIDSVLRDELQSMEKLAEKLRQAEELRQYKALVHSQAKELTQLREKLREGRDASRWLNKHLKTLLTPDDPDKSQGQDLREQLAEGHRLAEHLVHKLSPENDEDEDEDEDDKDEEVEKVQESPAPREVQKTEEKEVPQDSLEECAVTCSNSHNPSNSNQPHRSTKITFKEHEVDSALVVESEHPHDEEEEALNIPPENQNDHEEEEGKAPVPPRHHDKSNSYRHREVSFLALDEQKVCSAQDVARDYSNPKWDETSLGFLEKQSDLEEVKGQETVAPRLSRGPLRVDKHEIPQESLDGCCLTPSILPDLTPSYHPYWSTLYSFEDKQVSLALVDKIKKDQEEIEDQSPPCPRLSQELPEVKEQEVPEDSVNEVYLTPSVHHDVSDCHQPYSSTLSSLEDQLACSALDVASPTEAACPQGTWSGDLSHHQSEVQVSQAQLEPSTLVPSCLRLQLDQGFHCGNGLAQRGLSSTTCSFSANADSGNQWPFQELVLEPSLGMKNPPQLEDDALEGSASNTQGRQVTGRIRASLVLILKTIRRRLPFSKWRLAFRFAGPHAESAEIPNTAGRTQRMAG |
1 | 6gmhQ | 0.05 | 0.05 | 2.34 | 1.08 | EigenThreader | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGVEAMQEDYDQAFQYYYQATQFASSSFGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASE---DQEKRDIAKGHLKKVTEQYPDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDRAKAE----AEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNY--VDCYLRLGAMARDKYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEGQKKFERILKQPSTQSDTYSMLALGNVWLQTLHIYKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVFAQVREATADISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTLLKARHVAPSDTV---------LMFNVALVLQRLATSVLKDEK---------------SNLKEVLNAVKE |
2 | 5yfpE | 0.08 | 0.07 | 2.94 | 1.36 | SPARKS-K | | ---------------SLYELDPKWKKLL--KTDNFLEFVQELHRNDVIREAIWKQLDPKPIRTFESTLKELKNLNEETLNKRQYFSEQATQEVIHSENVIKLSKDLHTTLLTFDKLDDRLTNVTQVLGDKLETAIKK-------KQNYIQSVELIRRYNDFYSMGKSDIVEQLRLSKNWKLNLKSVKLMKLILSSKLETSSIPKTINTKLVIEKYSEMMENELLENFNSAYRENNFTKLNEIAIILNNFNGGVNVIQSFINQHDYFIFIKNVKFKEQLIDFENHSVIIETSMEKATHVIQLFIQLIDYFQLLEIDDSNQILSTTLEQCFADHYLYDRSKYFGIEKRSLEAILVDSKFTVNYDKEINKRVLLDKYKEKLNSPNSPANYSLNDVDSMLKCVVESTARVMELIPNKAILEILKIMFLGIVDSYMEIALEVAYCKVDINKTAGVVNLNFLKFISMSTEILDLLSISIKSIFLPLLNNSPEIKAIEMTNSQIQKMEILINIILQETTVISTKFSAILCKQKKKD---FVPKSQELLDQDTLPAIEIVNILNLIFEQSS---KFLKGKNLQTLIGEELYGLLLSHYSHFQVVTKDIIGYQTAIETLRELANLFTVQIGRDIIQNHDNFINSVK- |
3 | 2pffB | 0.03 | 0.03 | 1.85 | 1.42 | MapAlign | | SSLVEPSKVGQFDLVKTKELIKNYITARIQTYHVLVGDLIKFSAETLSENILTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLAIAETDSWESFFVSVRKAITVLFFIGVRCQEQVQDYVNKTNSHSLVNGAKNLVVSGPPQSLYGLGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKLQYVVERVGKRTGWLVEIVNYNVENQ |
4 | 2pffB | 0.18 | 0.13 | 4.18 | 1.15 | HHsearch | | MDYSTRPLTLSHGSL-----------------------EHVLLVPTA-SFFIASQLQEQFNKTPAELVGKFLGY----VSSLVEP----SKVGQFD----------------------------QVLNLCLTEFENCYLEGNDIHA-------LAAKL----LQEND-------TTL----------VKTKELI----KNYITARIMKRPFDKKSNSALFRAV------------GEGNAQLVA--------------IFGG----------QGNTDDYFEELRDLYQTYHVLVIKFSAETLSETLDAEQGLNILEWLENPSNTPD----KDY-----LLSIPISCPLIGVIQPGELRSYLKGATSQGLVTAVAIAETDSWESFFVSVRKITVLFFIVRCYE------AYPNTS-----------LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN----SHLPAGKQVE--ISLVNGAKNLV--VSGP-------------PQSLGLNLT--LRK--AKAPSGLDQSRIPFSENRFLPVASPFSHLLVPASDLVKNNVSFNAKDIQ--------IPVYDTGSDLRVLSGSISERIVLPVKWETTTQFKATHILDFGNKDGTGVRVIVAG |
5 | 3p5pA | 0.07 | 0.07 | 2.77 | 0.67 | CEthreader | | ARLATISSDGSEKPRFPQALNWVFNNQLQDSWGIESHFSLCDRLLNTTNSVIALSVWKTGHSQVQQGAEFIAENLRLLNEEDELSPDFQIIFPALLQKAKALGINLPYDLPFIKYLSTTREARLTDVSAAADNIPANMLNALEGLEEVIDWNKIMRFQSKDGSFLSSPASTACVLMNTGDEKCFTFLNNLLDKFGGCVPCMYSIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMPRLEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEEL-KLLTRWWKES-GMADINFTRHRVAEVYFSS-ATFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNP |
6 | 6tedQ | 0.06 | 0.06 | 2.59 | 1.02 | EigenThreader | | ARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARDLITQATLLYTMADLLGRACFCLLEGDKMDQADAQFHFVLNQSKACISFNKALAYYKKALRTEVRLGMGHCFVLEKARLAFSRALELNGLAVLELKNGVQLLSRAYTIDPSNVLNHLANHFFFKVQHLALHAFHNTEVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFAS--SSFVLPFFGLGQMYIYRGDKENASQ---CFEKVLKAYPNNYETMKILGSLYAASEDRDIAKGHLKKVTEQYPDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDRAKAEAE----HDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILRCYLRLGAMARDKGNFYEASDWFKEALQINQDHIGNLHLAKQEWGPGQKKFERILKQPSTQSDMLALGNVWLQTLHQPT---RDREKEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVFAQVREATADISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLA--RALFKCGKLQECKQTLLKARHVLQRLATSVLKDEKSNLKEVLNAVKELEL |
7 | 6zu9q | 0.08 | 0.07 | 2.69 | 0.89 | FFAS-3D | | ----------KSAKEKLLDEMQDVYNKISQAENSWLTISNEF---DLISRLLVRAQQQNWGAQVEDAVNKAVARAYNTTKQRVKKVSRENEDSMAQEDFFTRLQTIIDSRSTLEELLTVAEKPYEFIMAYLTSANLSYQPIDQWKSSFNDISKLLSILDQTIDTYQVNEFADPIDFIEDKSLLNIDPHSSDYLIRLRDEQSIYNLILRTQLYFEATLKDEHDLERALTRPFVKRLDHIYYKSENLIKIMETAAWNIIPAQFKSKFTSKDQLDSADYVDNLIDGLSTILSKQNNIAVQKRAILYNIYYTALNKDFQTAKDM---LLTSQVQTNINQFDSSLQILFNRVVVQLHLREILGQQSLHRISLNSSNNASARQCLPYHQNLDLIDVVFLTCSLLIEIPRMTAFYSGIKVKRPKSIRRSLEHYDKLSFQGPPE------------------------TLRDYVLFAAKSMQK------------GNWRDSVKYLREIKALLPNMETVLNSLTERVQVEFSFKRFYSSFSVAKLAELFDLP-----------------------------------------------------ENKVVE---VLQSVIAELEIPAKLNDEKTIGDEITKLEEAM- |
8 | 7abhu | 0.09 | 0.08 | 3.21 | 1.29 | SPARKS-K | | VIDRILYKLDDLVRPYVHKILVVIEPLLYYARVEGREIISNLAKALATMISTMRPDIDNMDEYVRNTTARAFAVVASALPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAIL---PHLRSLVEIIEHGLVDEQQ---------KVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHLIPLMDAEYANYYTREVLIREFQSPDEEMIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVG-AAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDH---KLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKGTVLWRLNNK--SAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLRLTPILKNRHEKVQAEYVSAREWMRICFELLELLKAHKKLATLLNNLKVQERQNRVCTTVAIAIVAETCSP-FTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVHVIQAVMGALEGLRVAIGPCRMLQYQGLFHPARK |
9 | 5xg2A | 0.10 | 0.03 | 1.03 | 0.72 | CNFpred | | ----------------AREEFDTVVKELEEARKSLYEGEARIKRAEEEKERLKAEILTGRLPGLRERAENLRRLVEEKRAEISELERR-SQSFELRIKLSDLEKELELARKDLEKVLAEERAVREEIEVAKR-------RINELDTLIERERGELAKLRGRIER------------LERKRDKLKKALENPEARELTEIRAVEKEIAAL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
10 | 3javA | 0.06 | 0.03 | 1.31 | 0.50 | DEthreader | | -----------------------------------------------------------------------------------------------------------AEGSTNGFISTRCVVLYLTVNKRLP-------AGNEGSWFYIQVLNQLVNTSWKIVLFMKGGDVVRLFHFLTC-LRTGRQSASA-DY-------E-I-GGS-E-----------PLVSGALQLFRHFSQRQEQKQQLLTSQ-VDNYKQIKQDQLSIEKSELWV-VVKELRLSLCVQESALHEFLQNFCAG----------------------------------MAELVNGEDVLVF---------------LAVCTEGKNVYTE-I---------KCNS-LLPLDDIVRVVTHEDCIPEVIACNNTS------------------------------------------------------------------------SRDYRNIIERLQDIVSALEDRLPLVQAELSVLVDVL-H-RPELLFP--------------------T-DRGGEMSLAEVHANLVIDLIMNA--SD----RVFHESILLAIALLGLENRA--L-GEDG-FLRAQPVLYWC------------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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