Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Download alignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 620 640
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| SS Seq | CCCCCSSSSSSSCCCCCCCCCCCCCCHHHHHHHHHCCCSSSSCCHHHHHHHHHHHHHHSSCCCCCCCCCCCCCSSSSSCCCCCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCSSSCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCCCCHHHCCCHHHHHCCCCCCCCCCCCCCCSSSSSCCCCCCCCCCCCSSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCSSSSSSSCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCSSSSSCCCCCCHHHHHHHHHHCCCCHHHHHHCCSSSSSCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCSSSSSSCCCCCCCCCCCCCSSSCHHHCCCCCCCSSSSCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC MSLAAYCVICCRRIGTSTSPPKSGTHWRDIRNIIKFTGSLILGGSLFLTYEVLALKKAVTLDTQVVEREKMKSYIYVHTVSLDKGENHGIAWQARKELHKAVRKVLATSAKILRNPFADPFSTVDIEDHECAVWLLLRKSKSDDKTTRLEAVREMSETHHWHDYQYRIIAQACDPKTLIGLARSEESDLRFFLLPPPLPSLKEDSSTEEELRQLLASLPQTELDECIQYFTSLALSESSQSLAAQKGGLWCFGGNGLPYAESFGEVPSATVEMFCLEAIVKHSEISTHCDKIEANGGLQLLQRLYRLHKDCPKVQRNIMRVIGNMALNEHLHSSIVRSGWVSIMAEAMKSPHIMESSHAARILANLDRETVQEKYQDGVYVLHPQYRTSQPIKADVLFIHGLMGAAFKTWRQQDSEQAVIEKPMEDEDRYTTCWPKTWLAKDCPALRIISVEYDTSLSDWRARCPMERKSIAFRSNELLRKLRAAGVGDRPVVWISHSMGGLLVKKMLLEASTKPEMSTVINNTRGIIFYSVPHHGSRLAEYSVNIRYLLFPSLEVKELSKDSPALKTLQDDFLEFAKDKNFQVLNFVETLPTYIGSMIKLHVVPVESADLGIGDLIPVDVNHLNICKPKKKDAFLYQRTLQFIREALAKDLEN |
1 | 4r0zA | 0.11 | 0.08 | 2.79 | 1.23 | CNFpred | | VNVRRNAIGALSHMSEQRGGPLLIFRSGGLAEIIRMVVHYAVTTLRNLLMHVSDSRAQAR-ALNAVEAL----TPHLHKT----------NPKLLAQVADGLYFLLAPSKITFLSL-----------LGPQILVSILREYS-DHRKLIYTVVRCIRSLSVCPSNKPALISLGCLPALYVELCTA------------------KDERSQTAILVAMRNLS--NLTQLIIKLLEIIR------------------------------VANDGMTACACGTLSNLTCNTRNKQTVCSHGGIDALVTAIRRLPEVEEVTEPALCALRHCTAAEEAQSELRFCQAFPVILDQLETLRTPVIKAALGVIRNSALL------QTNLIELTQEQTANGHTAVSLTM--DILRRAITAIEENPDIAV-------------GVPMWGVIEGAVSALHQLAN-------------------HPAVAAACCDDIGQVGNPECP------PFLDLLHRLLAHPRLGSMDDEVLEREILGLL--------YQLSKRPDGARAVEGVSALLMESRGQYKSVVTYANGVLSNLKRG-------------------------------------------------------------------------- |
2 | 4gw3A | 0.15 | 0.05 | 1.69 | 1.33 | HHsearch | | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------STKYPIVLVHGLAGFNEI--------V------------GFPYFYADALRQD--GHQVFTASLSAF------------NSNEVRGKQLWQFVQTLLTQAKKVNFIGHSQGPLACRYVAANY---P------DSVASVTSINGVNHGSEIADLYRRIMRFSGPQDALESLTT--EQVTEFNNKYPQALIVNGVHYYCFGSYIQGEKGEKQNDGLVGRSSMRLG--KLIDYAQDHIDMVNQVAGLVGYNEDIVAIYTQHAKYLASK |
3 | 6idyA | 0.10 | 0.05 | 1.99 | 0.54 | CEthreader | | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSLVSILSSAANDSSIESEARSIASLIASEIVSKIRSTKDAKSVQEAFDKIQSIFADGTPDFLKMTREILTVGLIPADILSFLNGYLNLDLNSIHNPSPKGQAIYPVKAPGDARYSVAENALRAAIHIPASFGYGKNGK-KPVILVPGTATPAGTTYY-----------------------FNFGKLGSAADADVVWLNIPQASLNDVQ-------INSEYVAYAINYISAIS--ESNVAVLSWSQGGLDTQWALKYW------PSTRKVVDDFIAISPDFHGTVMRSLVCPWLAALACTPSLWQQGWNTEFIRTLRGGGGDSA---YVPTTTIYSTFDEIVQPMSGSQASAILSDSRAVGVSNNHLQTICGGKPAGGVNPLAWALAVDALSHDGPGDPSR |
4 | 3opbA | 0.08 | 0.07 | 2.67 | 0.60 | EigenThreader | | AINTIFQLRQKSESGKMPADLTNSEALKDRQKIEEILTRSYQDDATIALLNELQIRIHYGEDTHQLLNKFKYNFKEVRFLVKELILRISESFQKDFDKAVVDFMSSLIVEAEIDVGNDSELYPSLTTLCSEIFLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLQIYSALVLVKTWSFTK---LTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTH-------CLYGLLVIMANLSTILLFNEKYIELISFLKREMHNLS--PNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKGEPIRILGCRALTRMLIFTNPGLIFKK----------------------YSALNAIPFLFELLPRSTPVDDNPDEQIKLTDNYEALLALTNLASS-------ETSDGEEVCKHIVSTKVYWSTIENLMLD-----------------EQRSTLELISNMMSHPLTI-------------AAKFFNLEQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQ----ID------DIELRQRLLML-----FFGLFEVIPD------------NGTNEVYPLLQENQKLKDALNMSLKRG |
5 | 3nowA | 0.12 | 0.09 | 3.18 | 0.98 | FFAS-3D | | ---------------------------------SSTIASVCLARIYRFTDQIDEYIKDKLLAPDM---------------------------ESKVRVTVAITALLNGPLDVGNQVVAR----------EGILQMILAMATTDDELQQRVACECLIAASSKKDKAVDILKRLYHLVGLCKLGSYGGQDAA-----IRPFGDGAALKLAEACRRFLIKPGKDKDRWAADGLAYLTLDAECKEKLIEDKAS-------IHALMDLARGGNQSCLYGVVTTFVDVDFINKRITVLANEGITTALCALAK--TESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGIRPLLNLLQQDCTALE-----NFESLMALTNLASMNES------------------VRQRIIK------------EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEEGNNDRV------------KFLALLCEDED-EETATACAGAL--------AIITSVSVKCCEKILAIDILHTLIANP--SPAVQHRGIVIIL-------NMINAGEEIAKKLFETDIMEL----------------LSGLGQLPDDTRAKAREVATQCLAAAER---- |
6 | 6tc0C | 0.09 | 0.08 | 2.94 | 0.76 | SPARKS-K | | GPFVEELFVTSCYFPIDFTPPPNDPYGIQREDLILSLRAVLASTPRFAEFLLPLLIEKVDSEITLNACCAVYGQKELKDFL--PSLWASIRREVFQRVEAEGLAALHSLTACLSCSVLRADAEDLLGSFSNILQDCRHHLCEPDMKLVWPSAKLLQAAAGASARACEHLTSNVLPLLLEQFHKHSQSNQRFLKLQQKWSYEDRERPLSSFKDQLCSLVPSTQLQLVGIRTLTVLGALLSAEDLELAVGHLYRLTFLEEDSQSCRVAYPGAFSRHLLPKLAEELHKGECLQALSAVSTLPLLLQHLCQANKESSEVVAVCQSLQQVAEKPESYWYFHKPCLFALAVQASMPLEDEVLAALASVIGTATTHLSPELAATCIVPLFLDGNTS-----------------------FLPENSFPFQPFQDGSS-----------GQRRLVALLTAFVCSLPRNVEIP------QLNRLMRELLKQSCGHSCPF------SSTAATKCFAGLLNKQPPGQQLEEFLQLAVGTV------------SRDQAFTLLLWVTKALVLRY--HPLSACLTTRLMGLLSDPEL----------GCAAADGFSLLMS------------DCTDVLTRAGHADVRIMRFFTDNVPALVQGFHAAPQD |
7 | 3ifqA | 0.13 | 0.09 | 3.26 | 1.18 | CNFpred | | --------------------------------------------AELATRALPELTKLLNDE------------------------DPVVVTKAAMIVNQLSK--KEASRRALMG------------SPQLVAAVVRTMQNTSDLDTARCTTSILHNLSH-HREGLLAIFKSGGIPALVRMLSSP--VESVLFY------------AITTLHNLLLYQ-----EGAKMAVRLAD---------------------GLQKMVPLLNKNNPKFLAITTDCLQLLAYNQESKLIILANGGPQALVQIMRNY-SYEKLLWTTSRVLKVLSVCPSNKPAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNLSDVAKQEGLESVLKILVNQLSVD-DVNVLTCATGTLS----------------------------------NLTCNNSKNKTLVTQN-------------------SGVEALIHAILRAGDKDDITEPAVCALRHLTAEMAQNSVRLNYGIPAIVK------LLNQP-NQWPLVKATGLIRNLALCPANHAPLQAVIPRLVQLLVKAHQDAQR-GVRMEEIVEGCTGALHILARDPMNRMEIFRL--NTIPLF----VQLLYSS--VENIQRVAAGVLCELAQDKEAA |
8 | 6n8eA | 0.07 | 0.04 | 1.68 | 0.67 | DEthreader | | ---------------------------------------------------------------ATLVEVFERRVPHASAVTL--DHTTW--LPRTLDAIAILYVPAYIITRNVVRLFEATDFYWDASVWEMFGQIPSAFYFMPWFDWHRGTRLLN-MYGITET-IN---------DVDTGRGSLVLEYVGRQELVSVRRDAVGDVQAY-PA-VV-EPPRDALDER-IVELWREQCGDVAI-----------VGGDSIKAIRV------VMALFDAPTVRACADYLR-D-------------------------------A-------------------------------------------------------HFKRPAQAR----------VHMVCVPSALSYRELA-R--------------------ALPD--G--------FACSAL-QLPGHDPAAPDEAFVDLDTTIDRAVDRLLAEAAA-P-IVVYGHCAGNALAVALVRRLA---GA-GA--NVIGLAIGGMLVLVGNIVDFLRQGFKDVLLAAIARMTKHDAMQAATFFAAETRAPARLDVPLHVVIGGQD----------PLTPDYRYLDWRVLDVIPDGGFVEHADTLA-G-LLA-AR--WL--------- |
9 | 4r0zA | 0.08 | 0.06 | 2.50 | 0.58 | MapAlign | | ---------------------------TQQLKQSVMDLLTYEGSNDMSGLSLPDLVKL--------------------------------MCDHDESVVARAVHRAYM-----LSREDPNFFNAPGFDHRSFVEALMAASKSSNVNVRRNAIGALSHMSRGGPLLIFRSMLYDLESVVHYAV---TTLRNLLMHV------------SDSRAQARA-------LNAVEALTPHL------------------------------HKTNPKLLAQVADGLYFLLIDAPSKITFLSLLGPQILVSILREYSDHRKLIYTVVRCIRSLSVCPSNKPALISLGCLPALYVELCAKDERSQTAILVAMRNLSDS-----ATNEENLTQL---------IIKLLEIIRVANDGMTACACGT-------------LSNLTCNNTRNKQTVCSHGGIDALVTAIRRLPEVEEVTEPALCRHCTEEAQSELRFCQAFPILDQLETLTPVIKAALGVIRNSALLQTNLIELTTHTAVSLTMDILRRAITAI---EENPDIAVDGVMWGVI-------EGAVSALHQLANHAVAACCFLLHRLLSMDDEVLEILGLLYQLSKRPDGVESTGVSALLMESRGSQYKSVVTYANGVLSNLKRGD--- |
10 | 1b3uA | 0.15 | 0.13 | 4.21 | 0.76 | MUSTER | | ---------------AAADGDDSLYPIAVLIDELR--VQLRLNSIKKLSTIALAL------GVERTRSE--------------------LLPFLTDTIYDE-DEVLLALAEQLGT-FTTLVGGPEYV--HCLLPPLESLATVEETVVRDKAVESLRAI--SHEHSPSDLEAHF-VPLVKRLAGGDWFTSRCGLFSVCYPRVS--SAVKAELRQYFRNLCSDD-TPMVRRAAASKL-----GEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP--QEDLEALVMPTLRQAAED--KSWRVRYMVADKFTELQKAVG--PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMQILPCIKEDANQHVKSALASVIMGLS-----PILGKDNTIEHLLPL---------LAQLKDECPEVRLNIIS--------NLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRV-IIEYM-PLLAGQLGVEFFDEKLNSLCMAWLV-----------DHVYAIREAATSNL---KKLVEKFGKEWAHATIIPKVLAMSGDPNYLINVLSEVCGQDITTK---HMLPTGDPVANV----------FNVAKPILDNSTLQSEVKPILEKLTQDQDVD |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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