Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCSSSSSSCCCCCCSSSSSSSCCCCCCCCCCCCCCSSSCCCCCSSSSSSSSCCCCCHHHHHHHHHHHHHCCCCCCSSSSCCCCCCCCCCCCSSSSSSSCCCCCCCCCCCCCCCCSCCCSSSSSSSSSSSSSCCCCCCCCCCSSSSSSSSSSSCCSSSSCCCCCCCCCSSSSSSSSSSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSCCSSSSSCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC SGNPGYQLGKPVRALNINRMNNVTTLHLWQSAGRGLCTSATFKPILFGENVLSGCLLEVGINENCTQLRENAVERLDSLIQATHVAMRGNSDYADLSDGWLEIIRVDAPDPGADPLASSVNGMCLDIPAHLSIRILISDAGAVEGITQQEILGVETRFSSVNWQYQCGLTCEHKADLLPISASVQFIKIPAQLPHPLTRFQINYTEYDCNRNEVCWPQLLYPWTQYYQGELHSQCVAKGLLLLLFLTLALFLSNPWTRICKAYS |
1 | 1w96A1 | 0.09 | 0.09 | 3.45 | 0.44 | CEthreader | | KSHGGHTVISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMIRMADQYIEVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASPEKLSQSKRKVIFIGPPGNAMRSLGGRARHLEVQLLADQYGTNISLFGRDCSEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYVNLPAAQLQIAMGIPMHRISDIRTLYGMNPHSASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPSGGTLHELNFRSSSN |
2 | 5jxfA | 0.08 | 0.06 | 2.56 | 0.62 | EigenThreader | | LQQGGMWIPSLL-------SGGMKISADDIY---SVNHSSLKDAVPHGGCESPKGLILTN----HHCGFDAIQNH--------------------------------SSVDHDYLTNGEDELPNENLVVTFIVSINDVTAQILDGVEGNQYILFVTEVFKDVRLVGAPPRHTGDFSMFRVYANVMGYPGKTQEYLAAGKQNEYGEVVVKNTELLSLGYKLYQLEQVFITKGEQAFNDRKENLIKSQADFFKDFNSTVDEKVFEQ |
3 | 1abrA | 0.10 | 0.07 | 2.49 | 0.49 | FFAS-3D | | ----------------------------------------EDRPIKFSTEGATS--------QSYKQFIEALRERLRGGLIHD-IPVLPDPTTLQERNRYITVELSNSDTE--------------------SIEVGIDVTNAY-------VVA----YRAGTQSYFLRDAPSTGTDQHSLPFYGTYGDLERWAHQSRQQIPLGL------------QALTHGISFFRSGGNDNEEKARTLIVIIQMVAEAAPDAAMISLENNWD |
4 | 5z06A | 0.11 | 0.11 | 3.81 | 0.65 | SPARKS-K | | AGSVAFTPGNSLELTYVSAPGGDWYSEIQYCPVRGNDFFREPSTLSMSMNAAALPNIAITYTQYL-NLRNYLLEDFGLNAVNAAVALRPG---TADGNDDIELLPASLPSVSALNAPVLQEAKAYER----HIDIKWIP----EDIKYYRIYRSPVAVRRPWMNRYTDFLGEVGK---KAYYKVTAVDYALNESNDSQTVSATTYPMTDEQWEGAEPNSGLARENIPGRNDMIATGASGFGIMAIVAGIERREEGVQRFLKITS |
5 | 2xn0A | 0.09 | 0.06 | 2.34 | 0.74 | CNFpred | | ---------LEYDLLYTIYR--RPVIVRSVQV-----HNHGEEAVYLE--KVASMQMDYV-------------------KDFEVITLPGA-------ANERRVQRENIG-------QGIKVFSSYGTSSHQMNPFMALVDHDTNE-FMGEAYGFALAYSG-NHKFEVERD----FGQIHVNTGINDY-----------NFKWKLNP-----EEFQTPEVLMVYSD-----QGLNKMSQAFHSLIHERI-PVLVNNWEATYFDFN |
6 | 5h3zA | 0.09 | 0.06 | 2.31 | 0.67 | DEthreader | | -----WIHESIINAFQGNLDGSTN--GSTLIFEGTSYT-VTFRLTP-YGIWFWDISLSGN--CN-K-A---DI---I--YSQDIGVGTKGSVNSNELYLAQLGHSI-Q-------------------DYGYVICSRQN-AQ-----GDLFPYLQQGSRSITEAFS--------LSGTKQFSFYGICKNHPEVPANSLLVSAQIRTSFYQ-Y--IKDGVIAHPHYRDHPALYANFD--R-------------------------- |
7 | 4grhA | 0.04 | 0.03 | 1.69 | 0.68 | MapAlign | | ALQQHDPARFPLLMESTQGRWSLLLGDGLRLDADGQVRPTALALRCIEYLFQVNLSRRWNAQFAAPVSPQALYAQLRRANAPFAGLFSAHGRH----VVSSSPHAQFEGDDERAEHVMLIDLERNDLGRICLVVVDELMTVESYAHVHHIVSNVSGHLRATPKVRTAEVDGHEVSFRTGAGIVVDSD----------------------------------------------PDKELDETRAKARGLLRAL------------ |
8 | 6jxrn | 0.09 | 0.08 | 3.19 | 0.52 | MUSTER | | TGQS-QDMNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPCASRRRQGASGEQYFGPGTRLTVTEDLKNVFP----PEVAVFEPSEAEISHT-QKATLVCL--ATGFYVELSWWVNGKEVHSGVSTDPQPLKYCLSSRLRVSATFWQNPRN---HFRCQVQFYGLSDEWTQDRAKPVTQIVSAEAWGRADC------FTSESYQQGVLSATILYEILLGKATLYAVLVSALVLMAMVKRK |
9 | 6m7dA1 | 0.14 | 0.02 | 0.77 | 0.42 | HHsearch | | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SPLFQGQRDAADPD--TLLQIYGYPACLGAIIVQVWIVLVKAIT |
10 | 1ulvA1 | 0.06 | 0.06 | 2.62 | 0.44 | CEthreader | | ADTPNTRELQFAVSDGTSAQRESEQTTRTVELADPKALSYRQTTTDNAGRWRLTKTYVTDPRRSTVMLGVTFEVLDGGDYQLFVLSDPSLAGTSGGDTGSVTDG-----ALLASDLADAATPVATALVSSVGFGAVANGYVGTTAGPGNISQTGQIPLAAGSLALGFGADTAEALATAKASLGTGYKKVSKSYTGEWKKYLNSLDAPATSLTGALRTQYDVSLMTVKSHEDKTFPGAFIASLTIPWGQAASAETHREGYHAVWA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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