Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| SS Seq | CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHCHHHHHHHHHHHHCHHHHCCCCCCCHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC MEDLLDLDEELRYSLATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQGGWAGDSVKASKFRRKASEEIEDFRLRPQSLNGSDYGGDIPIIPDLEEVQEEDFVLQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLFTEVSSEVLTEWDPLQTEKEDPAGQARHT |
1 | 1vt4I3 | 0.06 | 0.06 | 2.51 | 0.61 | CEthreader | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
2 | 7dl2D | 0.09 | 0.09 | 3.34 | 0.55 | EigenThreader | | MWKVSLQKEQARYNQLQEQRDTMVTKLHSQIRQLQHDREEFYNQSQELQTKLEDCRNMIAELRIELKKANNKVCHTELLLSQVSQKLSNSESVQQQMEFLNRQLLVLGEVNELYLEQLQNKHSDTTKEVEMMKAAYRKELEKNRSHVLQQTQRLDTSQKRILELESHLAKKDHLLLEQKKYLEDVKLQARGQLQAAESRYEAQKRITQ |
3 | 3kfwX | 0.10 | 0.09 | 3.16 | 0.41 | FFAS-3D | | --ADFGIKETTLRVALTRVGAGDRLSDRLLARQRRQDEAR-------------PRTRAWHGNWHLIVTSIGTD-----ARTRAALRTCHHKRFGELREGVWRPDNLDLDLESDVAARVRLTARDEAPADLAGQLWDLSGWTEAGHRLLGDDPGRFVVAAAVLPAELLPAD---WPGAGL-RAAYHDFATAAKRRDA------------ |
4 | 5yfpC | 0.12 | 0.11 | 3.93 | 0.85 | SPARKS-K | | IKKKEIEIEKSSIKKLPNSKNTARLQDETPKVIEYPTNKGLYQEIMSGTI----STRTAPRGYKHFL--INGINNSISEMFGEMREKYVGDQKFDVLDNMDWIFNELIIVKEHIANCCPPHWNIF----EVYFDQYYKELHSLITDLVESEPETIIILDILAKQDKSVIGDKE--KETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLE |
5 | 6f1sA | 0.15 | 0.04 | 1.45 | 0.44 | CNFpred | | -----------------------------------------------------------------------------------------------------------------------------------VEALDKKLLAYLDKHGEDSTIGMRAIITILN---AFTVDPNDLDLATFKAALLDFERNQPHL--------------- |
6 | 6z2wE | 0.08 | 0.06 | 2.49 | 0.83 | DEthreader | | ------------KGTPYAD-KNMLLRIDEFLRT-PSDLASRSALY--DIDSGVLRSKI------DCFNVMLYSQIEAANGVLALIAISNEDP--LRQKIHFIGFITS-SKETTLLKK-----------RENLPIYFVLTQLLSLILRGKLVALTLMVVPVNVVGDGNIYGIMCKDVRQDNQYMQFATMVGITLLMRKNSVAG------ |
7 | 4wsaC | 0.09 | 0.09 | 3.32 | 0.82 | MapAlign | | MLHCLQGENWRQIYHPGGNKLTESRSQSMIVACRKIIRRSIVASNPLELAVEIANKTVIDTEPLKSCLAAIDGGDVACDIIRAALQRQRFGRLELKRISGRGFKNDEEILIGNGTIQKIGIWDGEEEVRCGECRGILKKSKMKLEKLLINSAKIILCMVFSQDTRMFPKMWEMGTTKELVQNTYQWVLKNLVTLKAQFLLGKEDM--- |
8 | 6fmlG | 0.12 | 0.12 | 4.10 | 0.68 | MUSTER | | VALGYSTRSLVEYRLPRLIWCDGGRLDKPGPGRSKYLNHMMNIWTPENIRSSLEGIENFTWLRFVDTSLQEAYRASHTDVFARAVDLASKQNRYDEPEDKKWTPVHALFQICERENPKAVAEITTEGVLRDLMNIARVKYRELGLCRLEKAAR----PRASAPPIEVVCDSRSAVIERENIMFHPAMRKALFGPTPSEIKEASFGPRP |
9 | 1vt4I3 | 0.14 | 0.08 | 2.77 | 0.93 | HHsearch | | --------------------------------------------------------------------------EYALRSIVDHYNIPK---TFDSDDLIPPYLDFRFLE--QKIRHDSTAWNASGSILNTLQQLKFYKPY-----ICDNDPKYELVNAILDFLPKIEENLICSKYTDLLR------IALMAEDEAIFEEAHKQVQRG |
10 | 1kdgB | 0.08 | 0.08 | 3.21 | 0.48 | CEthreader | | ILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSINLVFTHPSIDAYENWADVWSNPRPADAAQYLANQSGVFAGASPKLNFWRAYSGSDGFTRYAQGTVRPGAASVNSSLPYNASQIFTITVYLSTGIQSRGRIGIDAALRGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMITPDVT |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|