Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460
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| SS Seq | CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCSSSSSCCCSSSSSSCCSSSSSSCCCCCCCCCCCCCCCCCCCCSCCSSSSSSCCCCCSSSSSCCCCCSSSCCSSCCCCCSSSCCCCCSSSSCCSSSSSSSCHHHHHHHHHHHCCCCCC MDKDSQGLLDSSLMASGTASRSEDEESLAGQKRASSQALGTIPKRRSSSRFIKRKKFDDELVESSLAKSSTRAKGASGVEPGRCSGSEPSSSEKKKVSKAPSTPVPPSPAPAPGLTKRVKKSKQPLQVTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLYDPVISKLACQAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPDAFYLARTAKALQAHWQLMKQYYLLEDQTVQPLPKGDQVLNFSDAEDLIDDSKLKDMRDEVLEHELMVADRRQKREIRQLEQELHKWQVLVDSITGMSSPDFDNQTLAVLRGRMVRYLMRSREITLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKNNGDFFIANEGRRPIYIDGRPVLCGSKWRLSNNSVVEIASLRFVFLINQDLIALIRAEAAKITPQ |
1 | 2ff4A | 0.08 | 0.05 | 2.07 | 1.13 | MapAlign | | ------------------------------------------------------------------------------------------------------------------------------TIDGTPVPSGTPKQRAVLAMLVIPVGVDALITALWPPSGA-RASIHSYVSNLRKLLGGAIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAGRFEQASRHLSAALREWLVED-KVLAHTAKAEAEIACGRAAVELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIAGRGYPLQAAATRIGRLH---DNDIVL----DSANVSRHHAVIVDT-GTNYVINDLSSNGVHVQHERI--RSAVTLNDGDHIRICDHEFTFQISA---------------- |
2 | 5t2sA2 | 0.18 | 0.05 | 1.56 | 1.30 | HHsearch | | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IGE--NIVCRV-ICTTGQI----PIRDLSADISVLKEKRSIKKVWTFGRNP-----ACDYHLGN-ISRLSNKHFQILLGEDGNLLLNDISTNGTWLNGQKVEKNSNQLLSQGDEITVGVLSLVIFINDKFKQCLEQNK------ |
3 | 2ff4A | 0.08 | 0.06 | 2.52 | 0.70 | CEthreader | | ----------------------------------------------------------EKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSY--VSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQQP--LDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLH-------DNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIR--SAVTLNDGDHIRICDHEFTFQISAGTHG------------ |
4 | 2ff4A | 0.10 | 0.07 | 2.49 | 0.95 | EigenThreader | | ----------------------------------------------------------------------------------------------------------------EKRLDFGL---LGPLGTPV-PSGTPKQRAVLAMLVINRNRDALITALWEEWPPSGARASIHSYVSNLRKLLGGAGDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRYRRVKTTLADDLGIDPGPTLRALNERILRKKSAKTTAAGTVTVLDQRT----MASGQ---QAVAYLHDIASGRGYPLQAAATRIGR----LHDNDIVLDSAN---VSRHHAVIVDTGTNYVINDLRSSNGVHVQHERI--RSAVTLNDGDHIRICDHEFTFQISAG--------------- |
5 | 2ff4A | 0.15 | 0.10 | 3.27 | 0.81 | FFAS-3D | | --------------------------------------------------------------------------------------------------------------------------------GTPVPSGTPKQRAVLAMLVINRNRITALWEEWPPGARASIHSYVSNLRKLLGGVAEKTAGVHAAAAGRFEQASRHLSAAQFVEPFATALV----------EDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMAS----GQQAVAYLHDIASGYPLQAAATRIGRLH-----DNDIVLDSA--NVSRHHAVI-VDTGTNYVINDLSSNGVHVQHERIR--SAVTLNDGDHIRICDHEFTFQISAG--------------- |
6 | 2ff4A | 0.13 | 0.09 | 2.98 | 0.74 | SPARKS-K | | ---------------------------------------------------------------------------------------------------------------EKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRVSNLRKLLGAAAPCDLGRFVAEKTAGVHAEQASRHLSAALREWRGPVLDDLRD-FQFVEPFATALVEDKVLAHTAIAELEALTFEHPY------REPLWTQLITAYYLS-------------DRQLGAYRRVKTTLADDLGIDPGPTLRALNERILKKSAKTTAAGTVTVLDQRT------MASGQQ-----AVAYLHDIASGYPLQAAATRIGRL-HDNDIVL------DSANVSRHHAVIVDTGTN-YVINDLSSNGVHVQHERI--RSAVTLNDGDHIRICDHEFTFQISAGTHG------------ |
7 | 2fezA | 0.13 | 0.07 | 2.56 | 0.99 | CNFpred | | -----------------------------------------------------------------------------------------------------------------------------------------CDLGRFVAEKTAGVHAAAA---------GRFEQASRHLSAALR--EWRGPVLDDLRDFFVEPFATALVEDKVLAHTAKAEAEIACGRSAVIAELEALTFEHPY------REPLWTQLITAYYLSDRQSD----------ALGAYRRVKTTLADDLGIDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTM------GQQAVAYLHDIGRGYPLQAAATRIGRLH-----DNDIVLDS--ANVSRHHAVIVDTG-TNYVINDLRSNGVHVQHERIR--SAVTLNDGDHIRICDHEFTFQIS----------------- |
8 | 6bcuA | 0.06 | 0.04 | 1.59 | 0.67 | DEthreader | | --------------------------------------------------------------------------------VYLPRVLDIRAALPPVGLGSITSHIRMVGITALNDRMSMLNVLAGWTLGLLEVLLNFLK----------------ALDPYKH----KVN-I--------NVVAR-RDLFNEQTLLRAKCRAYAINKLQQPEAAAGV--------------L-EYAMKHF------TWYEKLHEWELIVLCGKSGRLALAHKTLVLVAYMKNFMQFVQTMQQQAQHAIA-TEDQQHKQELHKLADRSWYKAHSNQDTLLANDSLRKNLS----------RSLAVMSMVG---YILGLGD--DFGDCFEKVMVLAFVLNRLTINRVRDKL-TGRDFS-----------------HDDTLDVPTVLLIKQAT----------------------- |
9 | 2pffB | 0.05 | 0.05 | 2.36 | 1.03 | MapAlign | | PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSGVIQLAHYVVTAKLLFTPGELRSAIAETDSWSFFVSVRKAITVSGPPQSLYGLNLTLRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG------G--------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGQDVWNRADNHFKDTYGF |
10 | 5w6lA | 0.13 | 0.13 | 4.35 | 0.54 | MUSTER | | FAKPIGASYQGILDQLDLVHQAKGRDQIAASFELNKKINDYIAEHPTSGRNQALTQLKEQV-TSALFIGKQVAQAGIDAIAQTRPEEEANGKHVGLTDVRWANEDPYLAPKHGYKGETPSDLGFDAKYHVDLGE-HYADFKQWLETSQSNGLLSKATKTVHLG--YSYQELQDLTGA--ESVQAFYFLKEAAKKADPEILLKKFADQSYLSQLDSDRDQIEGIYRSSHETDIDAWDRRYSGTGYDELTNKLASATGVDEQLAVLLDDRKGLLIGEVHGSDVNGLRFVNEQDALKKQGVTVIGLEHLRSDLAQPLIDRYLATGVSSELSALK-TKHLDVTLFEN---ARANG---RIVALDANSSARPNVQGTEH----GLYRAGAANNIAVEVLQNLPDGEKFVAIYGKAHLHKGIEGFVPGITHRLDLPALKVSDSNQFTVEQDDVSLRVVYDDVANKPKI |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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