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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.06 | 1v7uB | 0.601 | 2.24 | 0.182 | 0.655 | 0.58 | FPP | complex1.pdb.gz | 121,124,125,128 |
| 2 | 0.04 | 2vg00 | 0.610 | 1.75 | 0.226 | 0.648 | 0.47 | III | complex2.pdb.gz | 197,198,200,201,204,205,211,237,248,249,250,251,252,255,256,257,258,259,260,261,262,263,265 |
| 3 | 0.03 | 2e98A | 0.601 | 2.31 | 0.186 | 0.662 | 0.45 | B29 | complex3.pdb.gz | 117,120,121,124,189 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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