Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| SS Seq | CCCCCSSSSSCCCCSSCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHCCCSSCCCCCSSSSSSCCCSCCCCCCCCCHHHHHHHHHCCCCHHHHHCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHCCCCCSSSSCCCCSHHHHHHHHCCCCCCCCHHHHSSSSSSSC MGPKDSAKCLHRGPQPSHWAAGDGPTQERCGPRSLGSPVLGLDTCRAWDHVDGQILGQLRPLTEEEEEEGAGATLSRGPAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPSCQFLLRSKGRDFVHSVQETHSQLLGSWDPWEEPEDAAPVAPSVPASGYPELPTPRREVQSESAQEPGGVSPAEAQRAWWVLEPPGARDVEAQLRRLQEERTCKVCLDRAVSIVFVPCGHLVCAECAPGLQLCPICRAPVRSRVRTFLS |
1 | 6uebA | 0.06 | 0.04 | 1.92 | 0.67 | DEthreader | | --P-EKLLN----LTLGRIPPEGVLSPPLIKPMRDFLLMSVQAVFHYLVIGGISGSPT--QSMSTQL-FHAWE---KVTNVHVVKR-ALSLKESINWKRTGSAL-HRFKYSEG---------------------GNYDFMFQ---------------P-MLYAQT-G--VHPSLYIMLRSLRGEIFSVSRKVGCS-EWVCKDVLNMFPDAKLVIFVQVNMSYDIDGPLYLVFTGLVLMSLVLNCSSPKSEM-----QRAR----------SL--NY-----QDLVRGFPEINPVSTML |
2 | 3t6pA | 0.44 | 0.32 | 9.24 | 3.06 | SPARKS-K | | ---------------------------------------------------------------------------------GSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEFVDEIQGRYPHLLEQLLSTEDAEMGFNRDLVKQGENYKTAEDEKREEEKEKQAEEMASVINKQEHDIIKDKNMKYISLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVCQECAPSLRKCPICRGIIKGTVRTF-- |
3 | 6b5bA | 0.23 | 0.20 | 6.19 | 2.04 | SPARKS-K | | TGKRDTVQCFSCGGSLGNWEEGDDPWKEHAKWFPKCEF---------------------------LQSKKSDSV---------FANEELRMDMFKDWPQESPVGVEALVRAGFFYTGKKDIVRCFSCGGCLEKWAEGDDPMEDHIKFFPECVFLQTLKSRSLSEQLRDNYTKATRHMNLPEVCSSLGTDHLLSCKHISQPVQEALTIPEVFSASGCCPLLPDQGLANIICAQLLGAGSEVCLSSSIQQL---------QHQVLFLLDDYSGLASLPQALHTLITKNYLSRTCLLIAVH |
4 | 3t6pA | 0.42 | 0.31 | 8.97 | 1.16 | MapAlign | | ---------------------------------------------------------------------------------GSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEFVDEIQGRYPHLQLTCVLPILDNLLKANVINKQEHDIIKQKTQIPLQARELIDTILVKGNAAANIFKNSLKEISGLSLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVCQECAPSLRKCPICRGIIKGTVRTF-- |
5 | 6b5bA | 0.22 | 0.18 | 5.83 | 2.94 | HHsearch | | TGKRDTVQCFSCGGSLGNWEEGDDPWKEHAKWFPKCEFLQSKKSDS------------------------------------VFANEELRMDMFKDWPQESPVGVEALVRAGFFYTGKKDIVRCFSCGGCLEKWAEGDDPMEDHIKFFPECVFLQTLKSSALSEQLRDNYTKTFRHMNLSSLGTHLLSCEALFNVEGETGSGKTFLKIAFSGLSSITDQGLANIICAQLLGAGGCI-S-EVCLSSSIQQLQHQVLFYLSRTCLLIAVHTNRRDIR-----LYL---GTS-LEIQEFPF |
6 | 3t6pA | 0.42 | 0.31 | 8.97 | 1.13 | CEthreader | | ---------------------------------------------------------------------------------GSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEFVDEIQGRYPHLLEQLLSTEDAVLQARELIDTILVKGNAAANIFKNSLKEIDSTLYKNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVCQECAPSLRKCPICRGIIKGTVRTF-- |
7 | 3t6pA | 0.41 | 0.30 | 8.69 | 1.42 | MUSTER | | ---------------------------------------------------------------------------------GSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEFVDEIQGRYPHLAEEMASKTQIPLQARELIDTILVKGNAAANIFKNSLKEIDSTLYKNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVQECAPSLRKCPICRGIIKGTVRTF-- |
8 | 3t6pA | 0.44 | 0.32 | 9.33 | 4.54 | HHsearch | | ---------------------------------------------------------------------------------GSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEFVDEIQGRYPHLLEQLLSTETPVKSALEMGFTVQSKIKDIVSALLNAEDEKQAEENVINAADKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVCQECAPSLRKCPICRGIIKGTVRTF-- |
9 | 3t6pA | 0.43 | 0.31 | 9.05 | 1.71 | FFAS-3D | | ----------------------------------------------------------------------------------SMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEFVDEIQGRYPHLLEQLLSTEDAVMMNTPVVKSALEMGFNRDEKREEEKEKQAEEMASIDSTLYKNLFVDKNMKYIPSLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVCQECAPSLRKCPICRGIIKGTVRTF-- |
10 | 3t6pA | 0.39 | 0.28 | 8.33 | 1.07 | EigenThreader | | ---------------------------------------------------------------------------------GSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEFVDEIQGRYPHLLEQLLSTEDAVMMNTPVVKSALEMGNVINKQEHDIIKQKTQIPLQARELIDTILVKGTEDVSGLSLEEQLRRLQEERTCKVCMDKEVSVVFIPCHLVVCQECAPSLRKCPICRGIIKTVRTF--- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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