Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCHHHCCCCCCCSSSCCCHHHHHHHHHHHHSSSSSSSSSSSSSHHHHHHHHHHHHCHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC MHRLMGVNSTAAAAAGQPNVSCTCNCKRSLFQSMEITELEFVQIIIIVVVMMVMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRAPPNRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL |
1 | 1vt4I3 | 0.07 | 0.07 | 2.88 | 0.66 | CEthreader | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
2 | 5efrA | 0.06 | 0.06 | 2.47 | 0.55 | EigenThreader | | LYGNKRSTDVSSLYMNRGYMLFELYTIPGQTFSRDAIQESIRRLAQLNQEAFERAMEFYNQGDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY--------QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE- |
3 | 3cnfB | 0.12 | 0.11 | 3.96 | 0.38 | FFAS-3D | | --HVAVVLYQSGVINGPASTYLRENEVLVVMPDYYDVVSRFANAEIADIFDQADFIQTSDAVRQYGKLTLRFLGTLTRSLKMQNAIRPDGTVLRYDDQIDIEAFRWSRYFLDELQLRRLSVGRLITNPRIARRFNGVRIMYLTDDDPDPDFVP--DVPEGYHRLFSSSLANKRNRVTHPPTGMAYPPHVHMTINER-------AGMSKLVADNIIASVIKSNWVVDILDIEYTAEVMT---PSEGYTQHVDAESIMTAPKGKLFHLQFMDGLLRPEAGEDMRLIYPL |
4 | 5jcss | 0.07 | 0.07 | 2.73 | 0.96 | SPARKS-K | | IPKLIDSYKNVKSIYMNTKFISAHTRVVINKPDQLIQS---------SVYDSIFSEAADCFAGAEPIIQAIGESLDIASSRISLFLTQHVPTLENLDDSIKIGRAVLLKEKLNIQKKSMNHSLRLMEQISVCIQMTEPVLAKMLAKKTVINVSQQTETGDLLGGYKPKTVAVPIQENFETLFNATFSLKKNEKFHKMLHRCFNKNQWKNVVKLWNEAYKMAQSILKIT--------NTENENENAKKKKRRLNTHEKKLLLDKWADFNDSVKKFEAQSSSIENSFVF |
5 | 3c81A | 0.09 | 0.02 | 0.92 | 0.23 | CNFpred | | ----LNAAKSELDKAIG--RNCNGVITKDEAEKLFNQDVDAAVRGIAPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
6 | 6vr4A | 0.07 | 0.05 | 2.21 | 0.83 | DEthreader | | -YGV--IVNAFTDH-FVSEVNRAKSGHAKNDFFKRVPATYTNGTKGLQQDLP--------ELDKGS--I---L----------K-SIQKNLP--------------IEAPIKDKYNIFSKNS--KLKTNGGSFIQPPGQIFSHVQRAIGYRINGQSSNDP-LQIVAVLPNQNRLFDLYWAVLTTYGDLITIDFPHVKDEIKR-D---LVHNKDKEYSEELNGTRFKIKDISA-LN--------FDTNGSVNTLLFTDILFLLGSPIADFAPFKVGDPYIKDIYENSS |
7 | 1vt4I3 | 0.09 | 0.09 | 3.33 | 1.21 | MapAlign | | TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLAIFEEAHKQVQGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG----- |
8 | 2atyA | 0.13 | 0.13 | 4.46 | 0.65 | MUSTER | | TFRLIGEKSLLCITKDKVDGAPKCEYFNKYSSCPEPIVPGGYKIRGSTPYR---SVTFACK-TNFSMNGNKSVWCQANNMWGPTRLPTCVSVFPLEGSIEGRGGSELADPEVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLTITLTPKVTVVDISKDDPFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKESAAFPAPIEKTISKTKGRPKAPQLYTIPPPK-MITDFFPEDITVEQWNGQPAENYKNTQPIMNTNESYFVYSQKSNWEEGLHNHHT |
9 | 5tx1O | 0.44 | 0.03 | 0.82 | 0.50 | HHsearch | | ----------------------------------------------------------------------------------------------------------------------------AKRLRVDDFNPVYPYGYA------------------------------------------------------------------------------------------------------------------------------------------------- |
10 | 1uasA | 0.07 | 0.07 | 2.77 | 0.43 | CEthreader | | LADYVHAKGLKLGIYSDAGSQTCSNKMPGSLDHEEQDVKTFASWGVDYLKYDNCNDAGRSVMERYTRMSNAMKTYG-----KNIFFSLCEWGKENPATWAGRMGNSWRTTGDIADNWGSMTSRADENDQWAAYAGPGGWNDPDMLEVGNGGMSEAEYRSHFSIWAKAPLLIGCDVRSMSQQTKNILSNSEVIAVNQDSLGVQGKKVQSDNGLEVWAGPLSNNRKAVVLWNRQSYQATITAHWSNIGLAGSVAVTARDLWAHSSFAAQGQISASVAPHDCKMYVLTPN |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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