Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Download alignment | | 20 40 60 80 100 120 140 160 180 200 220 240
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| SS Seq | CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GPQDSSRQYNHAAANQNSNATSNIRKEFVPKWNKPSDVSATERTAKYTMEGKGRAAHPALAVTVPGPAEVRVSNVRPKMKALDAEDGKRGSTASQYDNVPGPELDSGASVEEALERAFASPQFSPGTQLNPSRRPHGSTLSVSASPEKSYSRPSPYTYRPETQGQSWTRDASRGNLPKYSAFQLAPFQDHGLPAVSVDSPVRYKASPAAEDASPSGYPYSGPPPPAYHYRNRDGLSIQESVLL |
1 | 5t88A | 0.07 | 0.07 | 2.78 | 0.51 | CEthreader | | SFSIGGADEGITRIIDLKTGEVIEEIKPSIWNITFLKDGYYFTRFYRKEKTPDGVNPPAARMFWKDREGERMVFGEGLTSGYFMSIRKLTKEGKGLGKIIAIKNGKIDEVIPEGEFPLEWAVIVRDKILAGRLVHASYKLEVGEKIKEITFDVPGSLYPLDKDEERVLLRYTSFTIPYRLYEFKDDLRLIEERKVEGEFRVEEDFATSKDGTKVHYFIVKGERDEKRAWVFTPMFFPQVIPFL |
2 | 6yttB1 | 0.07 | 0.07 | 2.78 | 0.53 | EigenThreader | | VQCGFGSAGVCCRNCRVSPGICGATADVIVSRNFARMVAAGTAAHSDHGRSIALSLYHTSKDIYDIAHDVAKEGLSNYGKPRAVDREIAAVMHSTIKMSMRCSLTDGWMGSFMGTEFSDIMFGTPHSYSVEEIINTQIGPMQTVKPLADVLVSGVLRGCNNPKVVQDSAHIETIKGLIKNDGCAAQAAAKYGLLQKEAAEKYAGPGLATVCKLVDIPPLGVDMSDLPEWMSEKAVAIGTYVVT |
3 | 2at2A | 0.08 | 0.08 | 3.09 | 0.43 | FFAS-3D | | --SELSTEEQTAQELKSGKTDNQLTKFAANLFFEPS-TRTRFSFEVAEKKLGMNVLNLDGTSTSVQKGETLYDTIRTLESVIRHSEDEYYEELVSQVNIPILNAGDGCGTQSLLDLMTIYEEFNTFKGLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDRIQNERHQSAVSQEGYLNKYGLTVERAERMKRHAIIMH-PAPVNRGVEIDDSLVESEK--SRIFKQMKGVFIRMAVIQ |
4 | 4btgA | 0.12 | 0.11 | 3.91 | 1.19 | SPARKS-K | | SAIDHMGQPSHVVVYEDWQFAKEI-TAFTPVKLADVEPGISDRMSATLAPI-----GNTFAVSAFVKNRTAVYEAVSQR---GTVNSNGAEMTLGFPSVVEVDESLEARASNDLKRSMFNYYAAYAVAHNPEVVVSEHQGVAA-----EQGSLYLVWNVRTELRIPVGYNAIEGGSIRTP----EPLEAIAYPSEVLQAKIHIWPWHEASTEFAYEDAYSVTIRN-----KRYTAEVKEFELL |
5 | 3kd6A | 0.10 | 0.02 | 0.77 | 0.19 | CNFpred | | CGNTSEAEMRKAVLYGSAMASFCVEQFGPYRYNDLDLLEVDDRYQSFLELS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
6 | 6r9tA | 0.09 | 0.07 | 2.53 | 0.67 | DEthreader | | -----------MKGKN--DG-Y-------APAETDYTAVGCAVTTISSNLT-MS-GVKLALLED--------L-AKLAGAVSELLRSAQP-------ASAEPRQNLLQAAGNGTKVVAPISHTGAGNKKKLVQRLHAAKAAATQIAAAQHA--AAKAS-------------SQCAKN------EGISQEAHTMAVIMAFLAALTTEASAGLGQCSPSDKQLKPREADESLN-FEEQILEAAKS |
7 | 3gvjA | 0.06 | 0.06 | 2.66 | 0.87 | MapAlign | | -ISRFINTRFVYERIPGQPLYYASTPYYNAWPQDKAFVYENVIYAPYMGSDRHGVSRLHVSWVKSGDDGQTWSCMSMGVCRNRLFAMIETRTLAKNALTNCALWDRPMSRSLHLTGGITKAEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSE |
8 | 6etxG | 0.12 | 0.12 | 4.11 | 0.89 | MUSTER | | RWLRVLSPFAPDYIQRSLFHRKGINEESCFSFLRFIDISPAEMANLMLQGLLARWLALFLSLKASYRLHQLRSWGAPEGESHQRYLRNKDFLLGVNFPLSFPNLCSCPLLKSLVFSSHCKAVSGYSDQVVHQRRSATSSLRRCLLTELPSFLCVASPRVTAVPLDSYCNDRSRRVLKEGGSLAAKQCLLNGAPELAADWLNRRSQFFPEPAGGLWSIRPQNGWSFIRIPGKESLITLYALDVL |
9 | 2pffB | 0.20 | 0.19 | 6.06 | 0.70 | HHsearch | | TTLDAEKVFTQGLNEWLENPSNTPDKDYLLSIPISCQLAHYVVTAKLLGELRSYLKGATGHSTAVAIAESFFVSVRKAITVLFFIG------VRCYEAYPNTSLP-PSILEDSLEEGVPSPMLSI-SNLTQEQVPAGKQVEILVNGAKNLVVSGPYGLNLTLAKAPSGLDQSRRKLKFSNRFVASPFHSHLLVPASNKDLVKNNVSFNAKDIQIPVYD----TFDGSDLRLPWETTTQFKATL |
10 | 1fwxA | 0.07 | 0.07 | 2.89 | 0.51 | CEthreader | | NRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDDAILEIPNAKGIHGLRPQKFCNGENVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRRSAVVAEPELGL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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