Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140
| | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSCCCCCSSCCCCCCCCCCCCCCSSSSSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC MLTRKPSAAAPAAYPTGRGGDSAVRQLQASPGLGAGATRSGVGTGPPSPIALPPLRASNAAAAAHTIGGSKHTMNDHLHVGSHAHGQIQVQQLFEDNSNKRTVLTTQPNGLTTVGKTGLPVVPERQLDSIHRRQGSSTSLKSMEGMGKVKA |
1 | 2fkjA1 | 0.07 | 0.07 | 2.95 | 0.69 | CEthreader | | VLVSKEKNKDGKYDLIAELKGTSDKNNGSGVLEGVKADKSKVKLTISDDLGQTTLEVFKEDGKTLVSKKVTSKDKSSTEEKFNEKGELSEKKITR--ADKSSTEEKFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKITRADKSSTEE |
2 | 3h7nA | 0.07 | 0.07 | 2.77 | 0.58 | EigenThreader | | QNPYDFTVRVPHFLFVFLEDGGLLGSCKLFHERYLIVLTQNCHLKIWDLTSFTLIDEEYLANLETILRDVKTAFNEASSITLYGDEIILVNCFQ---PYNHSLYKLNTTVENWFYNMHSETDGSELFKYLRTLNGFASTLELPDSMTTVEK |
3 | 2kaoA | 0.10 | 0.07 | 2.70 | 0.30 | FFAS-3D | | ----------GGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSP--WPAFTETIHPDSVTKCPEKNRPEA------LKVSCGKCGN-GLGHEFLNDG-------PKRGQSRFIFSSSLKFVPKGKEAA--------------ASQGHLEH |
4 | 7jjvA | 0.16 | 0.13 | 4.38 | 0.94 | SPARKS-K | | -------MQCDGLDGADGT-----------SNGQAGASGLAGGPNCNGGKGGKGAPGVGTAGGAGGVGGAGGT-------GNTNGG----AGGSGGNSDVAAGGAGAAGGAAGGAGTGGTGGNAGKPGGAPGAGGAGTPAGSAGSPGQTTV |
5 | 3iaqA | 0.06 | 0.01 | 0.59 | 0.33 | CNFpred | | -----------------------------------------------------------------------AVLEAEVQMCGELRDYLRVTVSLWQG--ETQVASGTA------------------------------------------- |
6 | 2i2xA | 0.05 | 0.04 | 1.92 | 0.83 | DEthreader | | -GPVKAGLDLEIGA-------GYTIPEI--NY--APTEHQQMSGVAQMCALRTLSSAGAYEAGAGPG-KDC-GY-ENIIKATG----MPMTMEGKTDMGNLM-WSN-EGGTVQSELAYCAMTADLRDLMMLSDRYRDPQAMLAYDNAYR-- |
7 | 2fkjA1 | 0.04 | 0.04 | 2.04 | 0.95 | MapAlign | | VSKEKNKDGKYDLIATVDKLELKGTSDKNNGSGVLEGVKADKSKVKSDDLGQTTLEVFKEDGKTLVSKKVTSKDKSSTEEKFNEKGELSEKKITRADKS--STEEKFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKITRADKSS--- |
8 | 6etxG | 0.11 | 0.11 | 3.86 | 0.67 | MUSTER | | NKDFLLGVNFPLSFPNLCSCPLLKSLVFSSHCKAVSGYSDQVVHQRRSATSSLRRCLLTELPSFLCVASPRVTAVPLDSYCNDRSAEYERRVLKEGGSLAAKLLNGAPELAADWLNRRSQFFPEPAGGLWSIRPQNGWSFIRIPGKESLIT |
9 | 2pffB | 0.18 | 0.15 | 4.75 | 0.63 | HHsearch | | IGNNEGVPS-------PMLSIS--NLTQEQV--------QDYKTNSHLPAG-KQVEISLVNGAKNLVVSNLTLRKAKAPS-GLDQSRIP---FSEKFSNRFPVASFHSHLLVPNAKSDLGSISERIVDCIIRLP------VKWETTTQFKA |
10 | 4agiA | 0.09 | 0.09 | 3.32 | 0.52 | CEthreader | | VAATSKELKHIRVYTLTEGNTLQEFAYDSGTGWYNGGLGGAKFQVAPYQKPDNTIQEYMWKEGTNLGGALPGTGIGATSFRYTDYNGPSIRIWFQTDDLKLVQRAYDPHKGWYPDLVTIFDRAPPRTAIAATSFGAGNSSIYMRIYFVNSD |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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