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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.09 | 2i35A | 0.867 | 2.71 | 0.149 | 0.968 | 0.27 | RET | complex1.pdb.gz | 61,66,107,110,113,153 |
| 2 | 0.08 | 1f88B | 0.834 | 2.65 | 0.142 | 0.926 | 0.13 | RET | complex2.pdb.gz | 64,65,68,69 |
| 3 | 0.07 | 2g87A | 0.868 | 2.81 | 0.142 | 0.971 | 0.23 | RET | complex3.pdb.gz | 61,68,109,110 |
| 4 | 0.04 | 2ks9A | 0.879 | 2.33 | 0.150 | 0.949 | 0.17 | III | complex4.pdb.gz | 10,11,12,94 |
| 5 | 0.04 | 3aymB | 0.854 | 2.61 | 0.161 | 0.939 | 0.16 | RET | complex5.pdb.gz | 58,62,234 |
| 6 | 0.04 | 2ksbA | 0.879 | 2.33 | 0.150 | 0.949 | 0.15 | III | complex6.pdb.gz | 56,60,233 |
| 7 | 0.03 | 3pdsA | 0.797 | 2.55 | 0.185 | 0.875 | 0.11 | ERC | complex7.pdb.gz | 11,18,19 |
| 8 | 0.03 | 1f88A | 0.863 | 2.91 | 0.142 | 0.971 | 0.13 | RET | complex8.pdb.gz | 69,70,73,74 |
| 9 | 0.03 | 3oaxB | 0.868 | 2.79 | 0.135 | 0.971 | 0.15 | RET | complex9.pdb.gz | 65,66,69,70 |
| 10 | 0.01 | 1ln6A | 0.571 | 5.18 | 0.089 | 0.846 | 0.29 | RET | complex10.pdb.gz | 67,110,151 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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