Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCHHHHHHHHHHCHHCHHSSCCSCCCCCCSCCCCCCCCCCCCSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSCCCCCCCSSCCCCCCCCCCCSSCCCCCSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSCCCCCCCSSCCCCCCCCSCCCCCCCCCCCCCCCCCCCCCCCSCCCCCCCCCSSCCCCCCCCSCCCCCCCSSCCCCCCHHHCCCCCCCCCSCCCCCCCSSCCCCCHHHHHCCCCCCCCCCCCCCSC MGSKTLPAPVPIHPSLQLTNYSFLQAVNGLPTVPSDHLPNLYGFSALHAVHLHQWTLGYPAMHLPRSSFSKVPGTVSSLVDARFQLPAFPWFPHVIQPKPEITAGGSVPALKTKPRFDFANLALAATQEDPAKLGRGEGPGSPAGGLGALLDVTKLSPEKKPTRGRLPSKTKKEFVCKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHSQVKELKTSKIKC |
1 | 5v3jE | 0.19 | 0.18 | 5.83 | 0.61 | CEthreader | | HTPSQLSHHQKLHVGEKPYKCQECGKAFPSNAQLSLHHRVHTDEKCFECKECGKAFMRPSHLLRHQRIHTGEKPHKCKECGKAFRYDTQLSLHLLTHAGARRFECKDCDKVYSCASQLALHQMSHTGEKPHKCKECGKGFISDSHLLRHQSVHTGETPYKELARHQRAHSGDKPYKCKECGKSFTCTTELFRHQKVHTGDRPHKCKECGKAFIRRSELTHHERSHSGEKPYECKECGKTFGRGSELSRHQKIHT------------ |
2 | 5v3jE | 0.16 | 0.15 | 4.85 | 0.73 | EigenThreader | | -PHKCKECGKAFHTPSQLSHHQKLHVGEKPYKCQECGKAFPSNAQLSLHHRVHTD-------EKCFEC--KECGKAFMRPSHLLRHQRIHTGEKPKECGKAFRYAGARRKDCDKCASQLALHQMSHTGEKP-HKCKECGKGSDSHLLRHQ---------------SVHTGETPYKCKECGKGFRRGSELARHQRAH---SGDKPYKECGKSFTCTTELFRHQKVHTGDRPHKCKECGKAFIRRSELTHHERSHSGEKPYKECGKTF |
3 | 5v3gD | 0.29 | 0.15 | 4.58 | 1.32 | FFAS-3D | | --------------------------------------------------------------------------------------------------------------------------------SNKSHLLRHQRTHTGEKPYVCRECGRGFRDKSHLLSHQRTHTGEKPYVCRECGRGFRDKSNLLSHQRTHTGEKPYVCRECGRGFSWQSVLLRHQRTHTGEKPYVCRECGRGFRDKSNLLSHQRTHTGEKPYVCRECG- |
4 | 5v3jE | 0.17 | 0.15 | 4.85 | 2.24 | SPARKS-K | | ------------------------PHKCKECGKAFHTPSQLSHHQKLHVGEKPYKCQECGKAFPSNAQLSLHHRVHTDEKCFECKECGKAFMRPSHLLRHQRIHTGEKPHKECGKAFRYDTQLSLHLLTH------AGARRFECKDCDKVYSCASQMSHTGEKPHKCKECGKTPYKCKECGKGFRRGSELARHQRAHSGDKPYKCKECGKSFTCTTELFRHQKVHTGDRPHKCKECGKAFIRRSELTHHERSHSGEKPYECKECGK |
5 | 5egbA | 0.40 | 0.14 | 4.21 | 3.73 | CNFpred | | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------EKPYVCRECGRGFSNKSHLLRHQRTHTGEKPYVCRECGRGFRDKSHLLRHQRTHTGEKPYVCRECGRGFRDKSNLLSHQRTHTGEKPYVCRECGR |
6 | 5n8oA | 0.06 | 0.05 | 2.08 | 0.67 | DEthreader | | -NYYVLGSMGERWAGVGYDLT-FS--A------PKSVSMMALIHNQAVDFVRVEALATGNL-----------------YANQIAFGRLYEKLKEQEA-G-IRTQAP-NGVERAGIDILTSGIHVLDELSVALSILVQIIATGRRQLLEATTLLDGAA---------ADFTVVSEQ--------KARAAILQKAGLHTPAQQAILFT-LGGEINAQIKRGDLLYVD---VAKGYGTGLLVSRASAE------------QLQAIGAQG |
7 | 5v3jE | 0.17 | 0.16 | 5.29 | 1.11 | MapAlign | | ---------KAFHTPSQLSHHQKLHVGEKPYKCQECGKAFPSNAQLSLHHRVECKECGKAFMRPSHLLRHQRIHTGEKPHKCKECGKAFRYDTQLSLHLLTHAGARRFECKDCDKVYSCASQLALHQMSHTGEKPHKCKECGKGFISDSHL-----------LRHQSVHTGETPYKCKECGKGFRRGSELARHQRAHSGDKPYKCKECGKSFTCTTELFRHQKVHTGDRPHKCKECGKAFIRRSELTHHERSHSGEKPYECKECGK |
8 | 5v3jE | 0.21 | 0.20 | 6.19 | 1.95 | MUSTER | | -----------PHKGKAFHTPSQLSHHVGEKPYKCQECGKAFPSNAQLSLHHRVHTCGKAFMRPSHLLRHQRIHTGEKPHKCKECGKAFRYDTQLSLHLLTHA--GARRFECKDCDKVYSC---ASQLALHQMSHTGEKPHKCKECGKGFISDSHLLRHQSVHTGETP------YKCKECGKGFRRGSELARHQRAHSGDKPYKCKECGKSFTCTTELFRHQKVHTGDRPHKCKECGKAFIRRSELTHHERSHSGEKPYECKE--C |
9 | 2rpcA | 0.24 | 0.14 | 4.21 | 1.14 | HHsearch | | ----------------------------------------------------------------------------------------------------GSSGS-SGQPIKQELSCKWI-----DEAQLSRPKKSCDRT---------FSTMHELVTHVTMHVGGPENHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFCGKIFARSENLKIHKRTHTGEKPFKCEFCDRRFANSSDRKKHMHVHTSDKSGPSSG--- |
10 | 2i13A | 0.32 | 0.17 | 4.98 | 0.54 | CEthreader | | ----------------------------------------------------------------------------------------------------------------------FSRSDHLAEHQRTHKPYKCPECGKSFSDKKDLTRHQRTHTGE------------KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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