Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCSSSCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCSSSSSCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC VKIPTEKRTRRKLMPSPLKGQHTLKSPPSQSVQLNDSLSKELQPIVYTPEDCRKAFQNPSTVTLMKPSSFTTSFQAISSNINSDNCLKMLCEVAIPHNRRKECGQEDLDSTFTICEDIKSSKCKLPEQESLPNDNKDILQRLDPSSFSTKHSMPVPSMVPSYMAMTTAAKRKRKLTSSTSNSSLTADVNSGFAKRVRQDNSSEKHLQENKPTMEHKRNICKINPSMVRKFGRNISKGNLR |
1 | 5yvfA1 | 0.07 | 0.05 | 2.19 | 0.56 | CEthreader | | ------------------------------------------------------DESMSIDNLRGFVDLNVGKWTGSFHQFDGNGNLLHKIDTRLSASSYGEDELLSLNQSLYIKQPTPE----WVEYKIKETNMFTVDKYQQIGFFPKERAFSLRY---QTAGMLDTTLRQGVLGESPRNLKLPSRRPSLVCENCLYSKIDRRARAFHIMDPKGVLEMLIVFLEERGAHPVLDNA---- |
2 | 2c2lA | 0.07 | 0.07 | 2.71 | 0.60 | EigenThreader | | ---SPSAQELKEQGNRLFVG-----RKYPEAAACYGRAITRNPLV-------AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES---YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKTRLIAAERERELEECQRNHEDDGHIRAQQACIEAKHKRDIPDYLCGKISFELMREPCITP---SGITYDRKDIEEHLQRVGHFNPVTRSPLTQENGWVEDY |
3 | 3j4bA | 0.04 | 0.03 | 1.66 | 0.40 | FFAS-3D | | ------------------------SAVNDILASIGEP------PVSTLEG------DANADAANARRILNKINRQIQSRGWTFNIEEGITLLPDVYSNLIVYSDDYLSLMS---TSGQSIYVNRGGYVYDRTSQSDRFDSGITVNIIRLRDYDEMPECFRYWIVTKASRQFNNRFFGAPEVE-----------GVLQEEEDEARRLCMEYEMDYGGYNMLDGDAFTSGLLTR-------- |
4 | 5yfpH2 | 0.11 | 0.08 | 3.02 | 0.95 | SPARKS-K | | -----------------------MRRDRSSVLILEKFWDTELDQLFKNVEGAQKFINSTKGRHILMNSANWMELNT-----TTGKPLQMVQIFILNIADKSRDKQN---------DFIVSQCYPLKDVTVTQEEFSTKRLLFKF---SNSNSSLYECRDA---------DECSRLLDVIRKAKDDLCDIF------HVEEENSKRIRFRYLQSTQQTPGRENNRSPNKNKRRSMGGSITP |
5 | 4effA | 0.07 | 0.02 | 0.87 | 0.29 | CNFpred | | ------------------------------------------------------------------------------------------------------------GALSIITDSKDEAARVLSQLKRVIRTNYSNPPT------------------HGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVER----------------------------------------- |
6 | 2csbA | 0.06 | 0.04 | 1.85 | 0.67 | DEthreader | | ----------------------E-ERETFLGV-AY--V---LATRYLERSSAKNDEELLELHQNFI-LLTGSYACSIDPTEDRY----L-RVDLPVTVDEVPPGEFRLDTARHVK---------RDRLLEEEHLEELSEYLPLTRRWI------V-EHKRDI-RRYLEQRIVECA--LKLQDRYG--IREDVALCLA---------RAFDIATTPYLATLIDEHGIAEIQLENPEKQL-- |
7 | 2pffB | 0.01 | 0.01 | 1.30 | 1.03 | MapAlign | | -------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGQGSQEQGMGMDLYKT-- |
8 | 6etxG | 0.09 | 0.09 | 3.35 | 0.75 | MUSTER | | LSPFAPDYIQRSLFHRKGINEESCFSIDISPAEMANLMLQGLLARWLALFLSLKASYRLHQLRSWGAPEGESHQRYLRNKDFLLGVNFPLSFPNLCSCPLLKSLVFSSHCKAVSGYSDQVVHQRRSATSSLRRCLLTELPSFLCVASPRVTAVPLDSYCND--RSAEYERRVLKEGGSLAAKQCLLNGAPELAADWLNRRSQFFPEPAGGLWSIRPQNGWSFIRIPGKESLITDS-GKLY |
9 | 2pffB | 0.12 | 0.11 | 3.98 | 0.72 | HHsearch | | ENDLIKNYITARIMAKRPFDKKAQLVADDYFEELRDLYQTYHDLIKFSAETLSELIRTLDAEKVFTQGL---NILEWLENPPDKDSIPISCPLQLAHYFTPKGATGGLVTAVAIAET-DSWESVRKFFIGVRCYE-AYPNTSLPPSILEDS-LENNEGVPSPMLSISNEQVQVNKNSHLPAGQLDQSRIPFSERKLKNNVSNAKDIQIPVYDTF--------DGSDLRVLSGSISERIVD |
10 | 4twlA | 0.09 | 0.07 | 2.82 | 0.49 | CEthreader | | IFDQTLGKLRRNYRAVDARLRNSGHDVLVDFKGNAGSL------------------------SINRVEYQLKRIHFHSPSEHEMNGERFDLEAQLVHES-----QDQKRAVVSILFRFGRAD---------------PFLSDLEDFIKQFSNSQKNEINAGVVDPNQLQIDDSAYYRYMGSFTAPPCTEGISWTVMRKVATVSPRQAVNENAINNARPLQPTNFRSVFYFEQLKS----- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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