Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140
| | | | | | | |
| SS Seq | CCSCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCSSSSSSSCCCCSSSSSCCCSSSSSSSSSSSSSSCCCCCCSSSSSSSSSSSSSSSSSSSSCCSSSSSSSSCCCSSSSSSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC HVNIQDTMIGELPPQTTKTLARFIPEVAVAYPKSKPLTTQIKIKKPPKVTMKTGKSLLHLHSTLEMFAARWRSKAPMSLFLLEVHFNLKVQYSVHENQLQMATSLDRLLSLSRKSSSIGNFNERELTGFITSYLEEAYIPVVNDVLQVGLPL |
1 | 4m4dA2 | 0.22 | 0.22 | 6.84 | 1.50 | DEthreader | | NFSITDDMLPHSIRLNTKAFRPFTPQIYKKYPD-MKLELLGTVVS-APILNVSPNLSLAPQMEIEGFVILP-TSAREPVFRLGVVTNVFASLTFNNSKVTGMLHPD-KAQVRLIESKVGMFNVNLFQAFLNYYLLNSLYPDVNAELAQGFPL |
2 | 1bp1A2 | 0.30 | 0.29 | 8.79 | 2.36 | SPARKS-K | | -MTLRDDMIPKKFRLTTKFFGTFLPEVAKKFPN-MKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVL-PNSALASLFLIGMHTTGSMEVSAESNRLVGELKLDR-LLLELKHSNIGPFPVELLQDIMNYIVPILVLPRVNEKLQKGFPL |
3 | 4m4dA2 | 0.23 | 0.22 | 7.02 | 1.47 | MapAlign | | NFSITDDMLDSGIRLNTKAFRPFTPQIYKKY-PDMKLELLGTVVSAPILNVSPGNLSLAPQMEIEGFVILP-TSAREPVFRLGVVTNVFASLTFNNSKVTGMLHPDKAQ-VRLIESKVGMFNVNLFQAFLNYYLLNSLYPDVNAELAQGFPL |
4 | 4m4dA | 0.23 | 0.23 | 7.20 | 1.52 | CEthreader | | NFSITDDMLPHGIRLNTKAFRPFTPQIYKKYPD-MKLELLGTVVSAPILNVSPGNLSLAPQMEIEGFVILP-TSAREPVFRLGVVTNVFASLTFNNSKVTGMLHPDK-AQVRLIESKVGMFNVNLFQAFLNYYLLNSLYPDVNAELAQGFPL |
5 | 1bp1A2 | 0.30 | 0.29 | 8.79 | 2.15 | MUSTER | | -MTLRDDMIPKESKLTTKFFGTFLPEVAKKFPN-MKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLP-NSALASLFLIGMHTTGSMEVSAESNRLVGELKLDR-LLLELKHSNIGPFPVELLQDIMNYIVPILVLPRVNEKLQKGFPL |
6 | 4m4dA2 | 0.23 | 0.23 | 7.20 | 4.38 | HHsearch | | NFSITDDMLPHDSGLNTKAFRPFTPQIYKKYPD-MKLELLGTVVSAPILNVSPGNLSLAPQMEIEGFVIL-PTSAREPVFRLGVVTNVFASLTFNNSKVTGMLHPDK-AQVRLIESKVGMFNVNLFQAFLNYYLLNSLYPDVNAELAQGFPL |
7 | 1bp1A2 | 0.30 | 0.29 | 8.79 | 2.14 | FFAS-3D | | -MTLRDDMIPKESKLTTKFFGTFLPEVAKKFPN-MKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAV-LPNSALASLFLIGMHTTGSMEVSAESNRLVGELKLDR-LLLELKHSNIGPFPVELLQDIMNYIVPILVLPRVNEKLQKGFPL |
8 | 4m4dA2 | 0.21 | 0.20 | 6.46 | 1.32 | EigenThreader | | NFSITDDMLPSGIRLNTKAFRPFTPQIYKKYP-DMKLELLGTVAPILNVSP---GNLSLAPMEIEGFVIL-PTSAREPVFRLGVVTNVFASLTFNNSKVTGMLHPDKAQVRLIESKVGM-FNVNLFQAFLNYYLLNSLYPDVNAELAQGF-P |
9 | 1ewfA | 0.29 | 0.28 | 8.62 | 2.24 | CNFpred | | KMTLRDDMIPKKFRLTTKFFGTFLPEVAKKFP-NMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPN-SALASLFLIGMHTTGSMEVSAESNRLVGELKLD-RLLLELKHSNIGPFPVELLQDIMNYIVPILVLPRVNEKLQKGFPL |
10 | 4m4dA | 0.22 | 0.22 | 6.84 | 1.50 | DEthreader | | NFSITDDMLPHSIRLNTKAFRPFTPQIYKKYPD-MKLELLGTVVS-APILNVSPNLSLAPQMEIEGFVILP-TSAREPVFRLGVVTNVFASLTFNNSKVTGMLHPD-KAQVRLIESKVGMFNVNLFQAFLNYYLLNSLYPDVNAELAQGFPL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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