Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC MMVQRLGLISPPASQVSTACNQISPSLQRAMNAANLNIPPSDTRSLISRESLASTTLSLTESQSASSMKQEWSQGYRALPSLSNHGSQNGLDLGDLLSLPPGTSMSSNSVSNSLPSYLFGTESSHSPYPSPRHSSTRSHSARSKKRALSLSPLSDGIGIDFNTIIRTSPTSLVAYINGSRASPANLSPQPEVYGHFLGVRGSCIPQPRPVPGSQKGVLVAPGGLALPAYGEDGALEHERMQQLEHGGLQPGLVNHMVVQHGLPGPDSQSAGLFKTERLEEFPGSTVDLPPAPPLPP |
1 | 7c72A | 0.07 | 0.07 | 3.01 | 0.46 | CEthreader | | WWQETRPEEDGRTTVIHLRGGHRTELLQAPWDARTRVHEYGGRSYLPIRTAEGWSVVFSNYDDQRLHRLDEGDPKPYPLTPLPAVPAGLRYADYVLSPDGTEVGHIAAPPEPAVTGIRRAIVAIPLDGRAAEDAGAIRELVAGAQFYASPAPSPGGGHLAWVQWNHPRMPWDGTEVRVAAVEDGRTVAPRTVKGGLKESALAPLWRDEESLYVISDWPGWWNIYQVGLHGESPQALYPAEEEFAGPLWQLGGMPYALLGDGRLAVLHGEGDLRLGVYDPETLDLVDLEVPYEHWAT |
2 | 4eplA | 0.08 | 0.07 | 2.95 | 0.53 | EigenThreader | | SAIYLQNCGLNDPLVTDVELEPYIKRMVDGDTSPILTGHPFAFRNRDFPIDDNGKALIFSSKQGVPVGTATTNVYRNPSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQEEIVTDIKDGVLSNRITVPSVRTAMSKLLTPNFPNAKGIMTYAGDLPLVSHDYGSSE----GWIAANVTPRLSP-EEATFAVIPNLGKPTQVKIGENLILSINIDKNTSGETNIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEHFLGLGKMPRCVKPSNAKVLQILCENTAF------------ |
3 | 2xd8A | 0.12 | 0.12 | 4.28 | 0.44 | FFAS-3D | | MNQVALGRSNLATDKYALYLKLFSGEMFKGFQHETIARDLVTKRTLKNGKSLQFIYTGHTPGTPILGNADKAPPVAEKTIVMDDLLISSAYDLDETLAHYELRGEISKKIGYALAEKYDASPVSATNFVEPGGTQIRVGSGTNESDAFTASALKGVSSQGRCAVLNPRQYYALGLVNRDVQGSALQSG--NGVIEIAGIHSMNIPFLGKYGVKYGGTTGETSGSHIGPTPENANATGGVNNDYGTNAELGAKSCGLIFQKEAAGVVEAIGPQVQVTNGDIYQGDVILGRMAMGLNP |
4 | 5fvmC | 0.10 | 0.09 | 3.27 | 0.87 | SPARKS-K | | HTIRFWEALTGVCSRTIQHADSQVNRLEITSDKKYLAAAGHLHVRLYDIRSNNPNPVSSFEGHKGNVTSIAFQQENRKVWDVRSPSVQRNYKHNAPVNEVAIHPNQGELISCDQDGNIRIWDLGEN-----QCTNQLTPEDNTPLQSLSVAS--DGSML-----VAGNNKGNCYVWRMPHHTDSTLEPVTKFKSH---------------TKYITRVLLSADVKNLATCSADHTARVWNIEDNYQLETTLDGHQRWVWDCAFSADSAYSDHYVRSEIVRQYGGHHKGAVCVALN-- |
5 | 1ordA | 0.05 | 0.04 | 1.69 | 0.67 | DEthreader | | --SSSLKVGAVIAMVIDISDELKKIFHINEIEAVNNYE-ILPFFLDLFVLGGSNANTVTSALVSNGDLVFVYNSAMA-PVYLQTYSDFDKIRELAAKVDPERAKWKRPF-RLAVIQLGYNAHEVVK---------RIGHLCDYIEFDSA------------------------VQSVHK---------Q-QAGFSQTS--M--ALDVN-----------------------AMQEGEAGRKLWHDLLITT-DPNKF----------PATIVANYQLQRLIEE-------QVLPSIY |
6 | 2pffB | 0.05 | 0.05 | 2.36 | 0.79 | MapAlign | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL-- |
7 | 2nbiA | 0.16 | 0.16 | 5.19 | 0.79 | MUSTER | | TECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDCDVLPFPNNLGCPACCPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTITSPAPSSQPSQCAEVIEQCPCFLPYGDSSPLDCTDPAVNRPDCDVL-INCPACCAFECRPDNPMFTPSPGSPPICSPTMMPSPEPSSQPSDCGEVIEECPIDACFLPKSDSARPPDCTAVGRPDCNVLPFPNNIGCPSCCPFECSPDNPM--FTPSPDGSPPSPTMLP |
8 | 2pffB | 0.14 | 0.12 | 4.16 | 0.75 | HHsearch | | MDAYSTRPLT----LSHGS-------L------EHVLLVPTASFFIASQKILPEPTEGADDEPTTPAEEFENCYLEGN--DILAAK--LLQENDTTLVKTKELIMAKRPFGNAQLVAIFGGQGNTDDYFEELR--DLYQTYVLVGDLIKFSAE------TLSELIRTTLKVFTQGLNILEENPSNTP--DKDY--LLSIPISCPLIAYPNTSLPPSILEDSSNLTQEQVQ-----DYVNKSHLPAGKSLVNGAKNLVVPQSLYGLTKAKASGLDQSRILKFSNRFLPVASPFHSHL |
9 | 5mrcEE | 0.07 | 0.06 | 2.55 | 0.43 | CEthreader | | SIKLAQQTIPEDTKFRVSRNVEFAPPYLDDFTKIHPFWDYKPGMPHLHAQEENNNFSIFRWDQVQQPLPGEGNILPPGVSLPKSKSADVAAGLHKQTGVDPDYITRKLTMKPLVMKRVSNQTGK---------------GKIASFYALVVVGDKNGMVGLGEGKSREEMSKAIAHWDAVRNLKEIPRYENRTIYGDIDFRYHGVKLHLRSAKPGFGLRVNHVIFEICECAGIKDLSGKVYKSRNDMNIAKGTIEAFTKAQKTLDEVALGRGKKLVDVRKVYYS------------- |
10 | 3j7jE | 0.04 | 0.04 | 2.17 | 0.52 | EigenThreader | | HFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLYSDDIAQLKQLQAETEPIVKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETITWLIHWSLKGRDNIIDLFLTMCPHILRYLTTAVITN--KDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFF--LVACLEDFIENARLFIFETFCRIHQKLNMTPEEAERWIVNLIRNARLDAK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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