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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.01 | 3ob8A | 0.363 | 7.22 | 0.049 | 0.571 | 0.12 | GAL | complex1.pdb.gz | 46,47,92 |
| 2 | 0.01 | 3cmvA | 0.321 | 7.44 | 0.038 | 0.518 | 0.12 | ANP | complex2.pdb.gz | 30,31,33,47 |
| 3 | 0.01 | 3cmvG | 0.333 | 7.80 | 0.023 | 0.556 | 0.22 | ANP | complex3.pdb.gz | 23,24,25 |
| 4 | 0.01 | 3cmvF | 0.326 | 7.90 | 0.037 | 0.552 | 0.13 | ANP | complex4.pdb.gz | 48,49,50,52 |
| 5 | 0.01 | 3cmvB | 0.286 | 7.65 | 0.048 | 0.474 | 0.33 | ANP | complex5.pdb.gz | 33,34,36,44 |
| 6 | 0.01 | 3cmvH | 0.332 | 7.57 | 0.056 | 0.543 | 0.21 | ANP | complex6.pdb.gz | 23,24,25,26 |
| 7 | 0.01 | 3cmvE | 0.319 | 8.12 | 0.025 | 0.562 | 0.30 | ANP | complex7.pdb.gz | 46,47,74,75,108,111 |
| 8 | 0.01 | 3cmvA | 0.321 | 7.44 | 0.038 | 0.518 | 0.13 | ANP | complex8.pdb.gz | 39,55,59 |
| 9 | 0.01 | 3cmvA | 0.321 | 7.44 | 0.038 | 0.518 | 0.13 | ANP | complex9.pdb.gz | 23,26,36 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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