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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.01 | 2y6iA | 0.284 | 7.30 | 0.050 | 0.390 | 0.22 | III | complex1.pdb.gz | 446,453,456,457 |
| 2 | 0.01 | 2uvcG | 0.279 | 9.07 | 0.043 | 0.437 | 0.11 | NAP | complex2.pdb.gz | 445,451,527 |
| 3 | 0.01 | 2xxnA | 0.086 | 4.89 | 0.037 | 0.102 | 0.16 | III | complex3.pdb.gz | 446,492,503,504,505 |
| 4 | 0.01 | 3cmvF | 0.260 | 8.95 | 0.046 | 0.400 | 0.21 | ANP | complex4.pdb.gz | 443,444,446,453 |
| 5 | 0.01 | 3cmvD | 0.257 | 9.35 | 0.051 | 0.413 | 0.24 | ANP | complex5.pdb.gz | 444,445,446 |
| 6 | 0.01 | 3cmvE | 0.260 | 8.99 | 0.043 | 0.401 | 0.25 | ANP | complex6.pdb.gz | 444,445,446,460 |
| 7 | 0.01 | 3l6xA | 0.276 | 5.81 | 0.108 | 0.343 | 0.26 | III | complex7.pdb.gz | 49,108,109,146,149,150,204 |
| 8 | 0.01 | 2uvaG | 0.280 | 8.90 | 0.039 | 0.428 | 0.11 | FMN | complex8.pdb.gz | 457,458,529 |
| 9 | 0.01 | 3cmvC | 0.256 | 9.36 | 0.051 | 0.411 | 0.18 | ANP | complex9.pdb.gz | 454,455,456,457 |
| 10 | 0.01 | 3mqrA | 0.076 | 5.17 | 0.035 | 0.091 | 0.27 | III | complex10.pdb.gz | 446,502,503,504 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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