Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSCCCCCCCCHHHHHHHHHCCCCSSSSSSSSCCCCCCCSSSSSSSCCHHHHHHHHHHHCCCSSCCSSSSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSCCCC MQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQVGIPRSSIMPAAGTMYLTTSTGYPYTYHNGVAYFHTPEVTSVPPPWPSRSVCSSPVMVAQPIYQQPAYHYQATTQYLPGQWQWSVPQPSASSAPFLYLQPSEVIYQPVEIAQDGGCVPPPLSLMETSVPEPYSDHGVQATYHQVYAPSAITMPAPVMQPEPIKTVWSIHY |
1 | 4wijA | 0.10 | 0.09 | 3.26 | 1.05 | EigenThreader | | TYTQRCRDITEDEFKRLFAKYGEPGELESTHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFERCSEGVFLLRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQM------------------------------------ |
2 | 1h2uX | 0.13 | 0.06 | 2.22 | 1.32 | SPARKS-K | | RSDSYVELSQYRDQHFRGDNEEQEKLLKKS--CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKL------------------------------------------------------------------------------------------------------------------------------------------- |
3 | 6d0yA | 0.21 | 0.06 | 1.80 | 1.67 | CNFpred | | ---------------------------------TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
4 | 6n7pF | 0.18 | 0.16 | 5.28 | 0.31 | CEthreader | | ------------------------------NNCSIFVGDLAPNVTESQLFELFIRYASTSHAKIVHDQTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVGPTSGMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDERAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRSAKQTALLQQAMLSNSLQVQQQQPGLQQPNYGYIPSSTCEANVSSTMLPGCQILNYSNPQQVIMQGSEAVVNSTNAMLNR |
5 | 6f7jB | 0.07 | 0.06 | 2.52 | 0.95 | EigenThreader | | ---------------------LECKPRPLHKTCSLFMRNIAPNISRAEIISLCKRYPGFMRVALSPQPERRFFRRGWVTFDRSVNIKEICWNLQNIRLRECELSPVNRDLTDIKLAAKLIHTLDDRTQLWQNPILKNIDEKLIKVLDKLLLYLRIVHSLYNTCPNEDEMPNRCGIIGPMPPNRISHGEVLEWQKTVRESLSEEEAQKMGRKDPEQEVEKFVTSNTQELGKDKWLCPLSGKKFKGPEFVRKHIFNKHAEKIEEVKKEVAFAKRPALP------- |
6 | 7b0yb | 0.18 | 0.09 | 2.87 | 0.98 | FFAS-3D | | FEDPRDAPPPTRAETREEWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNI-------------------------------------------------------------------------------------------------------------------------------------------------- |
7 | 1u1lA | 0.14 | 0.09 | 3.12 | 1.26 | SPARKS-K | | --------------------------KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASAS-------------------------------------------------------------------------- |
8 | 2mztA | 0.27 | 0.07 | 2.28 | 1.67 | CNFpred | | ---------------------------------LIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDDADVCIERLNNYNYGGCDLDISYAKRL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
9 | 6v85A | 0.03 | 0.02 | 1.35 | 0.83 | DEthreader | | ------NSPMD--G--I-CYLLTPDL-SGIAASFLTTDYCWWMISIAVIILSATESGTRVMSMVQG-------DNQAIAVTAFRSCNLFFERLKCNFGLGHHLKTIISFFYGRILTNGVEKCFNNYLSCS-------------GDPVVSVADLRL------L--RKPG-NGSWATEYQYPPT-ALK--DSTRSIMRSLPLSNRKLNE-YNY-----------EPPT-YLKAM--ANLRKEGLET-THRADNIQQLMTHLHTG-ASCCVRPVDHLEIDITRT-- |
10 | 6ybt1 | 0.08 | 0.07 | 2.91 | 0.74 | MapAlign | | -----------------GDVLKDRPQEADGIDSVIVVDNVPQVGLKNVIHKIFS-KFGITNDFYPEE-DGKTKGYIFLEYASPAHAVDAVKNADGYKLKQHTFRVNLFTDFDKYIALWGGEKFKQIQRFSHQGVQLIDFSCERYLVTFSPLMDTQDDPQAIIIWDILTGHKKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRVVTNKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQA------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|