Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540
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| SS Seq | CCCCCHHHCCCCCCCCCCCCCCCCCCSCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSSCCCCCSSSSSSCCCCSHHHHHHHHHHHHCCCCCCCSSSSSSSCCCSSSSCCCCCHHHHHHHHHHHHHHCCCCCCCCCSSSSSSSSSSCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCSSSSSSSCCCCCCCSSSSSSSCCCSSSSCCCCCSSSSSSSSSSSSSSSSCCCHHHHHHHHHHHHHHHSSSSSSCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC MAVPPRGRGIDPARTNPDTFPPSGARCMEPSPERPACSQQEPTLGMDAMASEHRDVLVLLPSREQLRLAVGVKATGRELFQQVCNVASIRDAQFFGLCVVRNNEYIFMDLEQKLSKYFSKDWKKERNEGNEKPRAPFVAFLRVQHYVENGRVISDHRARHLYYCHLKERVLRSQCAHREEAYFLLAACALQADLGEHRESAHAGRYFEPHSYFPQWIITKRGIDYILRHMPTLHRERQGLSPKEAMLCFIQEACRLEDVPVHFFRLHKDKKEGRPTVILGLALRGVHIYQGKKLEIQLDGLPAAQKLVYYTGCTWRSRHLLHLLRASHQLHLRVRPTLQQLRQREEAEEKQHYRESYISDELELDLASRSFPGSGVSSQHCPHCLSRHSADSHGSSYTSGIKANSWLRESREMSVDVPLEVHGLHEKEPSSSPRTSRSHPSTRGDSQATRQEPCTQVRTRGQSAEAVHQIQEMTAGVSEEQHSHGLDDMQLHQLALHPAPTSLSHTFHRALDCRLAGPCETRATLPSKRSSNCLALDLFGEAPPQEFVV |
1 | 5d68A | 0.12 | 0.06 | 2.17 | 0.67 | DEthreader | | ------------------------------TDQQGRSPLNICEAALLKAIKPYEKVRIYRMDGSYRSVELHGNTTVQQIMEGMRL--SQETQQYFTIWICSENLSLQLKPYHKPLQHVRDW--------------TPQLFLRRDLPLEVEKQIEDPLAILILFDEARYNLLKGFYTAPDAKLITLASLLLQIVYGNY-ESKKHKQGFLNENSIVVTKLKSKAP-HWTNRILHEYKNLSTSKEHHLQRMFLQNCWEIPTYGAAFFTGQ-------IPVYVGVNGLFMWQLGDTCFQIHSME--NKMSFIVHTK---QAGLVVKLLMKLNGQ-LM------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
2 | 2i1kA | 0.17 | 0.15 | 4.81 | 2.49 | SPARKS-K | | ---------------------------------------------------KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSGDLTWIKLYKKVMQQ---DVKKEN---------PLQFKFRAKFYPEDVAELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASYAVQARHGDHNPAVHGPGFLANDRLLPQRVTDKMSREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRNK---KNTELWLGVDALGLNIYEDRKFIIKPID-KKAPDFVFFAPRVRVNKRILALCMGNHELYMRRKPDTIDVQQMKAQAREEKLAKQAQREIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQHHHVAERADESGGGDLARGPDDLVDPVADRRTLAERNERLHNQLKALKQDLARSCDETKETA |
3 | 2i1kA | 0.16 | 0.14 | 4.62 | 0.62 | CEthreader | | ---------------------------------------------------KSMNVRVTTMD-AELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSGDLTWIKLYKKVMQQDVK------------KENPLQFKFRAKFYPEDVAELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASYAVQARHGDHNPAVHGPGFLANDRLLPQRVTDQHKREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRNKK---NTELWLGVDALGLNIYEKDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRKPDTIDVQQMKAQAREEKLAKQAQREIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQHHHVAERADESGGGDLARGPDDLVDPVADRRTLAERNERLHNQLKALKQDLARSCDETKETA |
4 | 2i1kA | 0.16 | 0.13 | 4.46 | 1.71 | MUSTER | | ---------------------------------------------------KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDKGDLTWIKLYKKVMQQ------------DVKKENPLQFKFRAKFYPEDVAELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASYAVQARHGDHNPAVHGPGFLANDRLLPQRVTDQMSREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRN---KKNTELWLGVDALGLNIYEKRKFIIKPID-KKAPDFVFFAPRVRVNKRILALCMGNHELYMRRKPDTIDVQQMKAQAREEKLA-------KQAQREIAARERAEKKQQEYQDRLRQMQEEME------------RSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETLEDEIRAKQEEVSRIQQEVELKDSETRRLQ------EEVEDARRKQDEAAAALLAATTPQHHHVAERADESGGG-------LARGPDDLVDPVADRR |
5 | 2i1kA | 0.19 | 0.15 | 4.92 | 2.67 | HHsearch | | ---------------------------------------------------KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDKGDLTWIKLYKKVMQQDVKK------------ENPLQFKFRAKFYPEDVAELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASYAVQARHGDHNPAVHGPGFLANDRLLPQRVTDQHKREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRNKK---NTELWLGVDALGLNIYEDRKFIIKPIDK-KAPDFVFFAPRVRVNKRILALCMGNHELYMRRRPDTIDVQQMKAQEEKIAARERAEKKQQEYQDMQEEMERS----Q---ANLLE-AQD------MILRLEEQLLQAAKEELEQRQNELQAMMQRLEET------LEDEI--RAKQEEVSIQQEVELKDSETRRLQEEVDARRK--QDEAAAALLA--ATTPQHHH-VA--------ERAD-----ESG---------GGDLARGPDDLVDPVADRR |
6 | 2i1kA | 0.11 | 0.10 | 3.51 | 1.27 | EigenThreader | | ---------------------------------------------------KSMNVRVTTMD-AELEFAIQQTTTGKQLFDQVVKTIGLREV-WFFGLQYTDSKTWIKLYKKVM-------------QQDVKKENPLQFKFRAKFYPDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASYAVQARHGDHNP--AVHGPGFLANDLPQRVTDQHKMEEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGALGLNIYEKDDKLTPKIGFPW--SEIISFNDRKFIIKPIDKKAPDFVFFAP-RVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKLAKQAQREIAARERAEKKQQEYQDRLRQMQEE--MERSQANLLEAQDMILRLEEQLRQLQ----AAKEELEQRQNELQAMMQRLEETLEDEIRAKQEEVSRIQ--QEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQHHHVAERADERGPDDLVDPVADRRTSCDETKETAMDKIHRENVRQGRDKYKTL |
7 | 1isnA | 0.20 | 0.11 | 3.43 | 2.57 | FFAS-3D | | -------------------------------------------------QPKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDV------------SKEEPVTFHFLAKFYPENEEELVQEITQHLFFLQVKKQILDEKVYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFTI---RNKKGTELLLGVDALGLHIYDPENRLKISFPWNEIRNISFNSSKLRVNKLILQLCIGNHDLFMRRRKAVQQMKAQAREEKARKQME-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
8 | 2j0kB | 0.10 | 0.08 | 3.04 | 1.15 | EigenThreader | | ---------------------------------------------------RVLK--VFHYFENSSIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSHWLH-LDMGVSNVREKFEL--------AHPPEEWKYELRIRYLPKGFTEDKPTLNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIRRSYGEMRGYEVLEKDVGLRRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGS-SWIISVELAIGPEEGISYLTKGMLQLKIAGAPEPLTVTAP-SLTIAENMADLIDGYCRLVNGATQSF-------------IIRPGVRSHTDDYAEIIDEEDTYTMPSTRDYEIQCIGEGQFGDSPENPAMTCKNCTS----------DSVREKFLQEALTMRQFDH-------PHIVKENPVWIIMELCTLGELRSFLQVR-KFSLDAYQLSTALAYLESKRFVHRDIADCVKLGDFGLSRLPIKWMAHGVKPFQGVKNNDVIGRIENGERLPMPPNC |
9 | 2i1jA | 0.24 | 0.12 | 3.70 | 2.55 | CNFpred | | ---------------------------------------------------KSMNVRVTTMD-AELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSGDLTWIKLYKKVMQQDV------------KKENPLQFKFRAKFYPEDVDELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASYAVQARHGDHNPAVHGPGFLANDRLLPQRVTDQ-SREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRNKK---NTELWLGVDALGLNIYE-RKFIIKPIDK-KAPDFVFFAPRVRVNKRILALCMGNHELYMRRRPDTIDVQQMKA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
10 | 2j0kB | 0.10 | 0.09 | 3.28 | 1.24 | MapAlign | | -----------------------------------------------------RVLKVFHYFTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLEEVHWLHLDMGVSNV----REKFE---LAHPPEEWKYELRIRYLPKFLNQFTDKPTLNFFYQQVKNDYMLEIADVDQEIALKLGCLEIRRSYGEMRGNALEYEVLELRRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSS-WIISVELAIGPEGISYLTKGMLQLKIAGA--PEPLTVTAPSLTIAENMADLIDGYCRLVSFIIRPGVRSHTDDYAEIIDEEDTYTMPSTRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMGVITENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSA------TDCVKLGDFGLSRLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGV |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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