Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340
| | | | | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCSSSSCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC MGNTLTCCVSPNASPKLGRRAGSAELYCASDIYEAVSGDAVAVAPAVVEPAELDFGEGEGHHLQHISDREMPEDLALESNPSDHPRASTIFLSKSQTDVREKRKSNHLNHVSPGQLTKKYSSCSTIFLDDSTVSQPNLRTTVKCVTLAIYYHIKNRDANRSLDIFDERSHPLTREKVPEEYFKHDPEHKFIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPTNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNEMERHFLELLQFNINVPASVYAKYYFDLRSLADDNNLNFLFAPLSKERAQNLEAISRLCEDKDLCRAAMRRSFSADNFIGIQRSKAILS |
1 | 2pk9D | 0.14 | 0.08 | 2.68 | 1.08 | SPARKS-K | | -------------------------------------------------------------------------------------------------------------------------QGIPKVILPADFNKCSRTDLVVLISRMLVSLIAINENSQ--------------ITLTRYHSKIPPNIS-IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGG-VRCHELNILENDFLKRVNYRIIPRDHNITLCSIE-----QKQSYVN-----RPKSGYNV----LDKYYRRIVQLVGSFNASPD---KSRKVDYVLP |
2 | 2pk9D | 0.16 | 0.08 | 2.67 | 1.03 | MapAlign | | ------------------------------------------------------------------------------------------------------------------------------VILPADFNKCSRTDLVVLISRMLVSLIAINENSQITLTRY---------------HSKIPPNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG-GVRCHELNILENDFLKRVNYRIIPGYNVLDKYYRRIVQLVGSFNASRKVDYVLPPNI---------------------------------------- |
3 | 2pk9D | 0.13 | 0.08 | 2.70 | 3.41 | HHsearch | | ------------------------------------------------------------------------------------------------------------------------QGIPKVILP-ADFNKCSRTDLVVLISRMLVSLIAINENSITLTRYHSK----------------IPPNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG-GVRCHELNILENDFLKRVNYRIIPRDHNITLCSIEQKQKKFVIDKNYSYVNRPKSGYNVLD---KYYRRI-VQL--VGSFNASPDKSKVDYVLPPNI |
4 | 4krcB | 0.14 | 0.06 | 2.08 | 1.16 | FFAS-3D | | ------------------------------------------------------------------------------------------------------------------------------------VPHISVDEALANFKETIELLLKLSGNNKEYSNFYMKSKPTLS----------------SADFLKRIQDKCEYQPTVYLVATFLIDTLFLQLKLNLQEKEVHRMIIAAVRLSTKLLEDFVHSHEYFSKV-CGISKRLLTKLEVSLLIVCNTKLMVSNRKLAASKLLLNEL---------------------------------------------------------- |
5 | 7kwoA | 0.07 | 0.05 | 1.97 | 0.67 | DEthreader | | -------LFPVSLHAVGV--SYWKASEGEYDKEDDKVFGSHTYVYLIGMGPEVHSQTDFLSHN---------------LWDYGMSSVQFKK-VFQ--T--TQP-----------------YRG----------------EL-NEHLGLLGPYIFA-YSFYSSLISKVQHMAPTK--C----Y--IGPLLVCTLNGRQVTVQEFAVMAQRIRWY-LL--SMGSNEN------------HS--IHFSGHVF-TV-R--KKE-E----Y---M--YNLYPGV-ECLIGLHGMSTLFLVP--YSLKWQTYRGPPIIAGCDLNSC-SM-PLGMESIKARLHLQN--GVKSLTSMYSTPVVNSLP |
6 | 4krcB | 0.13 | 0.06 | 2.12 | 0.94 | SPARKS-K | | -------------------------------------------------------------------------------------------------------------------------ENPLLHGIPVDVPHISVDEALANFKETIELLLKLSGNNKEYSNFYMKSKPTLS----------------SADFLKRIQDKCEYQPTVYLVATFLIDTLFLTRKLNLQEKEVHRMIIAAVRLSTKLLEDFVHSHEYFSKVC-GISKRLLTKLEVSLLICVCNKLMVSNRKLAASKLLLNELRSF------------------------------------------------------- |
7 | 4krcB | 0.12 | 0.05 | 1.89 | 0.87 | MapAlign | | -------------------------------------------------------------------------------------------------------------------------ENPLLHGIPVDVPHISVDEALANFKETIELLLKLSGNKKEYSNFYM----------------KSKPTLSSADFLKRIQDKCEYQPTVYLVATFLIDTLFLQLKLNLQEKEVHRMIIAAVRLSTKLLEDFVHSHEYFSKVC-GISKRLLTKLEVSLLICVNTKLMVSNRKLAASKLLLNELR--------------------------------------------------------- |
8 | 2pk9D | 0.13 | 0.08 | 2.79 | 0.66 | CEthreader | | -------------------------------------------------------------------------------------------------------------------------QGIPKVILPADFNKCSRTDLVVLISRMLVSLIAINE---------------NSQITLTRYHSKIPPNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGG-VRCHELNILENDFLKRVNYRIIPRDHNITLCSIEQKQKKFVIDKNYSYVNRPKSGYNVLDKYYRRIVQLVGSFNASPDKSRKVDYVLPPNID---- |
9 | 2pk9D | 0.14 | 0.08 | 2.86 | 0.94 | MUSTER | | ------------------------------------------------------------------------------------------------------------------------QGIPKVILPAD-FNKCSRTDLVVLISRMLVSLIAINENS---------------QITLTRYHSKIPPNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG-GVRCHELNILENDFLKRVNYRIIPRDHNITLCSIEQKQKKFVIDKNYSYVNRPKSGYNVLDKYYRRIVQLVGSFNASPDKSRKVDYVLPPNID---- |
10 | 4krcB | 0.14 | 0.06 | 2.19 | 3.41 | HHsearch | | --------------------------------------------------------------------------------------------------------------ENPLLH-----------GIPVDVPHISVDEALANFKETIELLLKLSGNNKEYSNFYM---------------KSKP-TLSSADFLKRIQDKCEYQPTVYLVATFLIDTLFLTLKLNLQEKEVHRMIIAAVRLSTKLLEDFVHSHEYFSKVC-GISKRLLTKLEVSLLICVCNKLMVSNRKLAASKLLLNELRSF------------------------------------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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