Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCHHHHHHHHHHHSSSSSSCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCSSSSSCCCCCCCCCCCCSSSSSSCCCCCCCCCCCSSSCCHHHHHHHHHHHCHHHHCCCSSSSSCCCCCHHHHHHHHHCCCCSSSSSCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCSSSSSSCCCCCCCCCCCCCCCCSSSSSCCCCCHHHHHHHHHHHHHHHCCCCCCCCCSSSSSSCCCCHHHHHHHHHHHHHHCCSSSSSSCCCCCCCCCCCCCCSSSSSSSC MAPEENAGTELLLQGFERRFLAVRTLRSFPWQSLEAKLRDSSDSELLRDILQKTVRHPVCVKHPPSVKYAWCFLSELIKKSSGGSVTLSKSTAIISHGTTGLVTWDAALYLAEWAIENPAAFINRTVLELGSGAGLTGLAICKMCRPRAYIFSDPHSRVLEQLRGNVLLNGLSLEADITGNLDSPRVTVAQLDWDVAMVHQLSAFQPDVVIAADVLYCPEAIVSLVGVLQRLAACREHKRAPEVYVAFTVRNPETCQLFTTELGRDGIRWEAEAHHDQKLFPYGEHLEMAMLNLTL |
1 | 3s1sA | 0.09 | 0.08 | 2.94 | 1.00 | DEthreader | | LN--NC-VF-----------------------SY-LPSYGDDEVSVYHPCHHEADFVYLIVVHYYCLDFFISPIVVG-NFSDGQLTGDALIDIATRGRGHEG-VPTDIELGKVLSIISQHLPLTEVISDPAAGSGNLLATVSAGFNVRQIWANDIETLFLELLSIRLGLLFPLVS-S-----NNA-PTITGEDVCSLNPEDFA--NVSVVV-NPPYVTIGVALFLELVTELVQD------GTVISAIPKQYLTAESKAFREFLVGNFGLEHIFLY-PRE-GLFEEVIKTVVFVGRS |
2 | 4rfqA | 0.17 | 0.15 | 4.87 | 1.17 | SPARKS-K | | ---AAPSQDT-------------DSPLSAASSSRNLEPHGKQP------------SLRAAKEHAMPKDLKKMLVIETLPGFQHVKLSVVKTILLKFPYEGGLKIWECTFDLLAYFTKAKVKFAGKKVLDLGCGSGLLGITAFKG-GSKEIHFQDYNSMVIDETLPNVVAN-STLEDRKPKVTQLYKCRFFSGEWSEFCKLVLSSEKYDLILTSETIYNPDYYSNLHQTFLRLL-----SKNGRVLLASKAHYFGGVHLFQKFVEERDFKTRILKIIDEGL-------KRFIIEITF |
3 | 2zwvA | 0.14 | 0.12 | 4.03 | 0.45 | MapAlign | | LALPAGRGTAYVQASLVAAARALRMGGRLYL----AGDKNKGFERYFKEARALLGYGVVVPYRVALLEKEKEAPPLPSARILGAEYTFH-----HLPGVFSAGVDPASLLLLEALQEGPEGVRGRQVLDLGAGYGALTLPLAR-MGA-EVVGVEDDLASVLSLQKGLEANAL-------------KAQALHSDV----DEALEEARFDIIVTNPPFAVIDVAQAFVNVAAARL-----RPGGVFFLVSNPF---L--KYEPLLEEKFGAFQTLKVA-----------EYKVLFAEK |
4 | 4pwyA | 0.18 | 0.14 | 4.61 | 0.49 | CEthreader | | ------------------------------------------------------GSVRRFESFNLFSVTEGAWVQYTSIFCPEYSISLRHSLNVEFDNTGNVCIWPSEEVLAYYCLKHNNIFRALAVCELGGGTCLAGLMVAISADVKEVLLTDGNEKAIRNVQDIITRN------QKAGVFKTQKISSCFLRWDNETDVSQLEGHFDIVMCADCLFLDQYRASLVDAIKRLLQPR-----GKAMVFAPRR-GNTLNQFCNLAEKAGFCIQRHENYDEHISYEENLHYPLLLILTK |
5 | 4pwyA | 0.22 | 0.17 | 5.43 | 1.06 | MUSTER | | -----------------------------------GSVRRFESFNLFS------------VTEGAWVQYT-------SIFCPEYSISLRHSLNLTSFDNTGVCIWPSEEVLAYYCLKHNNIFRALAVCELGGGTCLAGLMVAISADVKEVLLTDGNEKAIRNVQDIITRNQ------KAGVFKTQKISSCFLRWDNETDVSQLEGHFDIVMCADCLFLDQYRASLVDAIKRLL-----QPRGKAMVFAPRRG-NTLNQFCNLAEKAGFCIQRHENYDEHISIYEENLHYLLLILTK |
6 | 4rfqA | 0.18 | 0.16 | 5.05 | 0.92 | HHsearch | | AAP-SQDTDSP---------LSAAS-------SSR-NLEPHG----------KQPSLRAAKAMPKDLKKMLE--NKVITLPGHVKLSVVKTILENFPYEGGLKIWECTFDLLAYFTKAKVKFAGKKVLDLGCGSGLLGITAFKGG-SKEIHFQDYNSMVIDEVTPNVVANSTLEDRKPKVT-QLYKCRFFSGEWSEFCKLVLLFVKYDLILTSETIYNPDYYSNLHQTFLRLLSKN-----GRVLLASKAHYFGGVHLFQKFVEERDVFKTRILKIID------EGLKRFIIEITF |
7 | 4lecA | 0.21 | 0.13 | 4.18 | 1.88 | FFAS-3D | | ---------------------------------------------------------------------------------ANHTIQIRQD---WRHLGVAAVVWDAAIVLSTYLEMGAVELRGRSAVELGAGTGLVGIVAALLGA---HVTITDRKVALEFLKSNVQANLPPHIQTKT---------VVKELTWGQNLGSFSPGEFDLILGADIIYLEETFTDLLQTLEHLC-----SNHSVILLACRIRY-ERDNNFLAMLER-QFTVRKVH--------YDPEKDVHIYEAQ- |
8 | 4d7kA | 0.10 | 0.09 | 3.23 | 0.52 | EigenThreader | | QRLYQYNVDLKVAFVLYAVAKLHSDPSRLRRLLRAAAGADAEDSPMGDLGMTTFFAEPDVLAAYGDLVESVRTGYDFLARPQHKE----------VRDEFDAAMVEFGQYFADDFLTSFDFGRFTRFADIGGGRGQFLAGVLTAVPSSTGVLVG--PAVAASAHKFLASQNLT-----------ERVEVRIGDFFDVLP-----TGCDAYVLRGVLEDW-ADADAVRLLVRIRQAMGDAPEARLLILDSVIGELVLVAQWDDLLARAGFDIVGIDV------------WAVIECRG |
9 | 4qpnA | 0.23 | 0.14 | 4.45 | 1.28 | CNFpred | | ------------------------------------------------------------------------------------VLTITQNFGSR--LGVAARVWDAALSLCNYFESQNVDFRGKKVIELGAGTGIVGILAALQ--GGDVTITDLP-LALEQIQGNVQANVPA----------GGQAQVRALSWGIDHHVFP--ANYDLVLGADIVYLEPTFPLLLGTLQHLCRP-----HGTIYLASKMRKEHGTESFFQHLLPQHFQLELAQRDE--------DENVNIYRARH |
10 | 5wwqA | 0.11 | 0.08 | 2.94 | 1.00 | DEthreader | | -------------LDELQKQFN-G----LSV--PI--LQHPDLQ--LL-IPVI-GPRNIGGNGMTPLSPSFDS-VL--P----RYLFL---------------Q-N--LPSALVSHVLN-PQPGEKILDLCAAPGGKTTHIAALMHQGEVIALDKIFNKVEKIKQNALLLGL------------NSIRAFCFDGTKAVKPPFLPESFDRILLDAPCSYQPLQRKLFTAAVQLL--K--P-EGVLVYSTCTITLAENEEQVAWALKFCLQLQQLQRFDPS-----DSIGFFIAKFVK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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