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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.01 | 3cmvE | 0.309 | 7.31 | 0.026 | 0.515 | 0.11 | ANP | complex1.pdb.gz | 130,148,149 |
| 2 | 0.01 | 3cmxA | 0.297 | 7.90 | 0.042 | 0.542 | 0.13 | ALF | complex2.pdb.gz | 132,136,219 |
| 3 | 0.01 | 3cmvE | 0.309 | 7.31 | 0.026 | 0.515 | 0.21 | ANP | complex3.pdb.gz | 135,136,137,303 |
| 4 | 0.01 | 2omy1 | 0.173 | 3.11 | 0.090 | 0.198 | 0.12 | III | complex4.pdb.gz | 31,32,119 |
| 5 | 0.01 | 3cmvD | 0.290 | 7.67 | 0.040 | 0.510 | 0.19 | ANP | complex5.pdb.gz | 133,144,145,146,149 |
| 6 | 0.01 | 3cmvD | 0.290 | 7.67 | 0.040 | 0.510 | 0.15 | ANP | complex6.pdb.gz | 132,133,134 |
| 7 | 0.01 | 1bqu0 | 0.268 | 4.81 | 0.090 | 0.349 | 0.33 | III | complex7.pdb.gz | 92,100,154 |
| 8 | 0.01 | 3cmvG | 0.288 | 6.95 | 0.028 | 0.471 | 0.19 | ANP | complex8.pdb.gz | 130,131,149 |
| 9 | 0.01 | 3cmvC | 0.263 | 7.68 | 0.027 | 0.469 | 0.18 | ANP | complex9.pdb.gz | 131,146,170 |
| 10 | 0.01 | 1xmvA | 0.170 | 7.03 | 0.059 | 0.281 | 0.18 | ADP | complex10.pdb.gz | 131,149,202 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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