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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.01 | 3cf6E | 0.252 | 7.65 | 0.039 | 0.387 | 0.21 | SP1 | complex1.pdb.gz | 321,365,367,396,397 |
| 2 | 0.01 | 3pqrA | 0.350 | 3.79 | 0.092 | 0.391 | 0.11 | III | complex2.pdb.gz | 269,270,364 |
| 3 | 0.01 | 2hsqA | 0.166 | 3.19 | 0.060 | 0.184 | 0.12 | III | complex3.pdb.gz | 449,452,453 |
| 4 | 0.01 | 3dqbA | 0.349 | 3.78 | 0.096 | 0.390 | 0.37 | UUU | complex4.pdb.gz | 379,381,382 |
| 5 | 0.01 | 3rf3A | 0.169 | 3.24 | 0.076 | 0.186 | 0.16 | III | complex5.pdb.gz | 267,269,272,273,276 |
| 6 | 0.01 | 3s90A | 0.170 | 2.85 | 0.092 | 0.185 | 0.12 | III | complex6.pdb.gz | 445,448,449,452 |
| 7 | 0.01 | 1zvzA | 0.171 | 3.00 | 0.068 | 0.188 | 0.10 | III | complex7.pdb.gz | 348,351,352,434 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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