Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460
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| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSSSCCCCCSSSSCCCCCCHHHHHHHHHHHHCCCHHHSSSSSCCCCCCCCCHHHHHCCCCCCSSSSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHCC MWHAISRTSRMSQSGCPSGLLADKNISSSATRVIVKTAGNQKDFMVADDISVRQFKEMLLAHFQCQMDQLVLVFMGCLLKDHDTLSQRGIMDGHTIYLVIKSKQGSRSLAHSFRDLPTNDPCHRDRNTKGNSSRVHQPTGMNQAPVELAHFVGSDAPKVHTQNLEVSHPECKAQMLENPSIQRLLSNMEFMWQFISEHLDTQQLMQQNPEVSRLLLDNSEILLQTLELARNLAMIQEIMQIQQPSQNLEYPLNPQPYLGLETMPGGNNALGQNYADINDQMLNSMQDPFGGNPFTALLAGQVLEQVQSSPPPPPPSQEQQDQLTQHPATRVIYNSSGGFSSNTSANDTLNKVNHTSKANTAMISTKGQSHICATRQPAWIPALPSIELTQQLQEEYKDATVSLSSSRQTLKGDLQLSDEQSSSQITGGMMQLLMNNPYLAAQIMLFTSMPQLSEQWRQQLPTFLQQTQISDLLSA |
1 | 1oqyA | 0.14 | 0.08 | 2.79 | 1.06 | FFAS-3D | | -----------------SAV-----------TITLKTLQQQTKIRMEPDETVKVLKEKIEAEKAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSPSEESAPTTSAASTLVTGSEYETMLTEIMERERVVAALNNPHRAVEFLRDQPQFQNMRQ-------VIQQNPALLPALLQQLENPQLLQQISRHQEQFIQMAIGEEAPQMNYIQVTPQEKEAIERLKALGESLVIQAYFACEKNENLAALLSQNFDDE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
2 | 2ylmA | 0.09 | 0.08 | 3.07 | 1.03 | MapAlign | | ----------------------LGSEAHLYMQVQIVAEVKYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMPAMLDGNKTMIELSDNNPWTIFLETVDP-------------------ELAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDT---SLILYEEVKPNLTERILDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREEVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIEKFKFAIVMMGRHQYINEDEYEVNL |
3 | 1oqyA | 0.17 | 0.10 | 3.27 | 1.63 | HHsearch | | ----------------------------SAVTITLKTLQQTFKIRMEPDETVKVLKEKIEAEKGFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPTSGSHPPPAAPSTTSPESVSSVPSSSSGREED-AASTL---VTGSEYETMLTEIMSMGALRASYNNPHRAVEFLRDQPQFQQVIQQNPAL--L----PALLQQLG--QENPQLLQQISRHQEQ------------------------------------FIQMLNEPPGELA------D------------------I---------SDV-EGE-VG-----A------------I---------GE------------------------------EAPQM-NYIQVTPQEKEAIERLKALGFPELVIQAYFKNENLAANFLL-------------------SQNFDDE---- |
4 | 6djwA | 0.08 | 0.05 | 2.08 | 0.46 | CEthreader | | -------------------------YLGGSLSIYIKTNTGRLSVNLEPQWDIKNVKEIVAPQLGLQPEEVKIIFAGKELSDATTIQECDLGQQ-ILHAIRSRHFFVHCAQCNKLCK--------------------GKLRVRCSLCKGGAFTVHRDPECWDDVLKPRRITGHCESQEIACFDNETGDPPFTEFYFKCGEHVSGGEKDFAAPLNLIKINIKDVPCLA------------------------CTEVSETVLVFPCESKHVTCLECFEQYCRSRLSERQFMPHPDIGYTLPCPAGCENSFIEEIHHFKLLSREEYARYQRFATEEYVLQAGGVLCPQPGCGMGLLVEPECKKVTCQNGCGYVFCRNCLQGYHLGDCLP------------------------------------------------------------------------------------------ |
5 | 3jacA | 0.06 | 0.05 | 2.28 | 0.88 | EigenThreader | | -------------------------GGGGGGGG--------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFFHDILHTKAATDVYALMFLADIVDIIIIIFGFWAFGKHSAATDIASSLSDDQVPQAFLFMLLVQFGTMVIDRALYLRKTVLGKLAFQVVLVVAIHIWMFFILPAVTERQLWYFVKCIYFALSAYQIRCGYPTRILGNFLTFLVELRAVMDWVWTDTTLSLSNWMCVEDIYANIFIIKCSRETEKKYP |
6 | 1wx7A | 0.36 | 0.08 | 2.32 | 0.91 | FFAS-3D | | -------------SSGSSGSPAPVQ-DPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRAMGNECPASGPSS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
7 | 5yfpE | 0.06 | 0.06 | 2.41 | 0.91 | SPARKS-K | | RLSKNWKLNLKSVKLILSSKLETSSIP-----------------KTINTKLSEMMENELLENFENNFTKLNEIAI-ILNNGVNVIQSFI-----------NQHDYFIFIKNVKFKEQLIDFENHSVIIETSMQNLKIVKRVFEEKATHVIQL------FIQRVFAQKIEPRFEVLLRNSLSIS---NLAYVRILHGLFTLFGKFTKSLIDYFQLL-EIDDSNQIL--STTLEQCFADLFSHYLYDRS-------------KYFGIEKRSLEAILVDMTSKFTVNYDKEINKR---VLLDKYKEKLSTNTASDIDNSPNSPANYSLNDVDSMLKCVVESIPNKAHLYILEILKIMFLGIVDSIALEVAYWKICKVDINKTAGVVNSISIKSIFLPLLNNSPEIKAQIIEMTNSQIQKMEILINIETITVISTKFSAIAIEIVNILNLIFEQNLQTFLTLIGEELYGLLLSHYSHFQ |
8 | 4hwiB | 0.10 | 0.04 | 1.39 | 1.00 | CNFpred | | ------------------------------IRVRIKYGAVYHEINISPQASFGELKKMLTGPTGIHHQDQKLMYKDKERDSKAFLDVSGVKDKSKMVLIEDPLSQEKRFLEMRKIAKT-----------------------------------------------------------EKASKAISDISLEVDRLGGRVSAFEMVTKKGGKI------AEKDLVTVIELL-----MNELIKLD------AIVAEGDVKLQRKMQ---VKRVQNYVETLDALKVKNS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
9 | 5fvmA | 0.06 | 0.04 | 1.58 | 0.67 | DEthreader | | ---------LIS-VSTEYFQ-VIPSLRKTLQL-------KECASLTSVTKPYLEPVIEILLPS-V----TALKALGEISVGGEDMLPF-D-------DTDQSNILSQN----------------------ALDPYK---------------------------------------------------------HREVDVALLMQGEEYYPTVVIGVLMSTIQAIHPILVHLYFQQLSVLISIVKQ----------SRALEGEHRKSLVVFGPHLEEYV-----------------Q---PKLSAAK-DLELAV---YHAGKP---MQLFGLVNTLL-QNDPES-----FQRHLNIQQVPNSDTFH-------DRRTTYTRSAVMSVGMVHIDFGDCFEAAILREKY---------HAVMEQTGILVRARATLVLKRDGNDFPRCKLIQQATSVENLCQH---------------- |
10 | 1nyqB | 0.07 | 0.06 | 2.54 | 0.95 | MapAlign | | ---------------------------MEQINIQFP---DGNKKAFDKGTTTEDIAQSI---SPGLRKKAVGKFNGQLVDLTKPLE-----TDGSIEIVTPYWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEERKERDHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHAVDLYKTSGHWDPMQLDETESM--VLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEETL-----STAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTE---ETKGAFPTWLAPKQVQIIPVNVDLHYDYARQLQDELKKMGYKIREAQMEVENNQVNTVEKDEFIWNLVDEIRLKK--- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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