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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.01 | 1lm1A | 0.303 | 9.32 | 0.040 | 0.507 | 0.38 | F3S | complex1.pdb.gz | 555,596,597 |
| 2 | 0.01 | 1u6g0 | 0.330 | 8.16 | 0.066 | 0.498 | 0.38 | III | complex2.pdb.gz | 582,593,594,595 |
| 3 | 0.01 | 1ofdB | 0.339 | 8.90 | 0.029 | 0.540 | 0.35 | F3S | complex3.pdb.gz | 583,584,585,586,591 |
| 4 | 0.01 | 1w9c0 | 0.199 | 5.46 | 0.052 | 0.245 | 0.20 | III | complex4.pdb.gz | 83,87,104 |
| 5 | 0.01 | 1i7x3 | 0.300 | 6.95 | 0.038 | 0.414 | 0.15 | III | complex5.pdb.gz | 206,207,241,242,274 |
| 6 | 0.01 | 1i7x0 | 0.300 | 6.95 | 0.038 | 0.414 | 0.16 | III | complex6.pdb.gz | 143,145,175,176,180 |
| 7 | 0.01 | 1ofdA | 0.312 | 8.96 | 0.039 | 0.509 | 0.12 | FMN | complex7.pdb.gz | 564,565,589,590,591,597 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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